Variant report

Variant	rs62321778
Chromosome Location	chr4:120913814-120913815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1032817	1.00[ASN][1000 genomes]
rs11098555	0.92[EUR][1000 genomes]
rs11936056	0.92[EUR][1000 genomes]
rs12499151	0.92[EUR][1000 genomes]
rs17008457	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008785	0.86[EUR][1000 genomes]
rs28674650	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56209126	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321777	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321781	0.81[ASN][1000 genomes]
rs62321782	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62321788	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62321789	0.92[EUR][1000 genomes]
rs6833747	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842380	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv879849	chr4:120823634-120922444	Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv879850	chr4:120898509-120969089	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120911600-120914400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:120912200-120914000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr4:120912200-120914200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:120912200-120914600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:120912200-120914600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:120912400-120915200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:120912800-120914000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr4:120913400-120914600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:120913800-120914000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr4:120913800-120914600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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