Variant report

Variant	rs562307567
Chromosome Location	chr6:4079126-4079127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:13)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:13 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr6:4078558-4079475	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr6:4078644-4079326	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr6:4079060-4079210	HUVEC	blood vessel:	n/a	n/a
4	USF1	chr6:4078931-4079186	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr6:4079100-4079250	HCM	heart:	n/a	n/a
6	NANOG	chr6:4078977-4079228	H1-hESC	embryonic stem cell:	n/a	n/a
7	E2F6	chr6:4078511-4079484	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAX	chr6:4078667-4079409	H1-hESC	embryonic stem cell:	n/a	n/a
9	USF1	chr6:4078884-4079265	H1-hESC	embryonic stem cell:	n/a	n/a
10	USF2	chr6:4079046-4079126	H1-hESC	embryonic stem cell:	n/a	n/a
11	GABPA	chr6:4079038-4079512	H1-hESC	embryonic stem cell:	n/a	n/a
12	TBP	chr6:4078762-4079466	H1-hESC	embryonic stem cell:	n/a	n/a
13	GTF2F1	chr6:4079087-4079193	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ECI2-6	chr6:4079086-4079455	NONHSAT107292
2	lnc-C6orf201-4	chr6:4076360-4079955	NONHSAT107293

No data

Variant related genes	Relation type
C6orf201	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv462615	chr6:4052383-4096678	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv600860	chr6:4052383-4096678	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1030104	chr6:4062894-4240269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	esv3444323	chr6:4078453-4080526	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4066800-4079600	Weak transcription	NHLF	lung
2	chr6:4067000-4082400	Weak transcription	Brain Germinal Matrix	brain
3	chr6:4074400-4083000	Weak transcription	Pancreas	Pancrea
4	chr6:4078200-4084600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:4078600-4079200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
6	chr6:4078800-4079200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr6:4078800-4079200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
8	chr6:4078800-4079200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:4078800-4079400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:4079000-4079200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:4079000-4079200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:4079000-4079200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:4079000-4079200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:4079000-4079200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:4079000-4079200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:4079000-4079200	Bivalent Enhancer	Lung	lung
17	chr6:4079000-4079200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
18	chr6:4079000-4079400	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:4079000-4079400	Enhancers	Right Atrium	heart
20	chr6:4079000-4082400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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