The 2.0 version of rSNPBase

Variant report

Variant rs56252229
Chromosome Location chr3:17209196-17209197
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:17191400-17217600 Weak transcription Small Intestine intestine
2 chr3:17192200-17211400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr3:17193400-17210000 Strong transcription Fetal Intestine Large intestine
4 chr3:17194000-17211400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr3:17194800-17210400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
6 chr3:17195000-17224200 Weak transcription Fetal Kidney kidney
7 chr3:17195200-17223000 Weak transcription Fetal Brain Female brain
8 chr3:17195400-17209600 Strong transcription Dnd41 blood
9 chr3:17195600-17209600 Strong transcription Primary neutrophils fromperipheralblood blood
10 chr3:17195600-17210000 Strong transcription Monocytes-CD14+_RO01746 blood
11 chr3:17195600-17210800 Strong transcription Stomach Smooth Muscle stomach
12 chr3:17195800-17219000 Strong transcription Primary B cells from peripheral blood blood
13 chr3:17196000-17209800 Strong transcription Duodenum Mucosa Duodenum
14 chr3:17196200-17209600 Strong transcription Liver Liver
15 chr3:17196200-17210200 Strong transcription Adipose Nuclei Adipose
16 chr3:17196600-17212200 Weak transcription Placenta Amnion Placenta Amnion
17 chr3:17196800-17209800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr3:17197000-17210800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr3:17197200-17210200 Strong transcription Spleen Spleen
20 chr3:17197200-17211200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr3:17197400-17209600 Strong transcription Primary monocytes fromperipheralblood blood
22 chr3:17197600-17209600 Strong transcription Lung lung
23 chr3:17198400-17225200 Weak transcription HMEC breast
24 chr3:17198600-17210600 Strong transcription Breast Myoepithelial Primary Cells Breast
25 chr3:17198600-17212600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
26 chr3:17200000-17209200 Strong transcription Rectal Mucosa Donor 31 rectum
27 chr3:17200200-17209200 Strong transcription Placenta Placenta
28 chr3:17200200-17209600 Strong transcription Sigmoid Colon Sigmoid Colon
29 chr3:17200200-17216800 Weak transcription HSMMtube muscle
30 chr3:17200400-17216400 Weak transcription NHDF-Ad bronchial
31 chr3:17200400-17216600 Weak transcription NH-A brain
32 chr3:17200600-17210000 Weak transcription HUES6 Cell Line embryonic stem cell
33 chr3:17200800-17225600 Weak transcription ES-I3 Cell Line embryonic stem cell
34 chr3:17201000-17216400 Weak transcription Muscle Satellite Cultured Cells --
35 chr3:17201000-17220400 Weak transcription Pancreatic Islets Pancreatic Islet
36 chr3:17201200-17236200 Weak transcription Fetal Brain Male brain
37 chr3:17202000-17209600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr3:17202200-17213000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr3:17202400-17216400 Weak transcription HSMM muscle
40 chr3:17202400-17217200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr3:17202600-17212200 Weak transcription Primary T killer naive cells fromperipheralblood blood
42 chr3:17202800-17217400 Weak transcription HUVEC blood vessel
43 chr3:17203200-17212200 Weak transcription Brain Germinal Matrix brain
44 chr3:17203200-17216600 Weak transcription Colon Smooth Muscle Colon
45 chr3:17203200-17224400 Weak transcription A549 lung
46 chr3:17203800-17210400 Strong transcription Fetal Muscle Trunk muscle
47 chr3:17203800-17217200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr3:17203800-17244200 Weak transcription Colonic Mucosa Colon
49 chr3:17204200-17216600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
50 chr3:17204400-17209400 Strong transcription Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015