Variant report

Variant	rs73819641
Chromosome Location	chr3:17195699-17195700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17195512..17197058-chr3:17200290..17201914,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs4995986	1.00[ASN][1000 genomes]
rs56252229	0.86[ASN][1000 genomes]
rs56279437	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57736694	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61255999	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73819643	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73819645	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73819648	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73819650	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73819652	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73819653	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008636	chr3:17173415-17208267	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17183000-17198800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:17183600-17196400	Weak transcription	Fetal Heart	heart
3	chr3:17191400-17217600	Weak transcription	Small Intestine	intestine
4	chr3:17192000-17196000	ZNF genes & repeats	Fetal Stomach	stomach
5	chr3:17192000-17196400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:17192000-17196400	ZNF genes & repeats	Fetal Muscle Leg	muscle
7	chr3:17192200-17211400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:17193000-17196000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
9	chr3:17193000-17196800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:17193000-17197200	ZNF genes & repeats	Spleen	Spleen
11	chr3:17193000-17198600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
12	chr3:17193200-17196200	ZNF genes & repeats	Pancreas	Pancrea
13	chr3:17193200-17202600	Weak transcription	HepG2	liver
14	chr3:17193400-17195800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr3:17193400-17196200	ZNF genes & repeats	Adipose Nuclei	Adipose
16	chr3:17193400-17196200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
17	chr3:17193400-17196200	ZNF genes & repeats	Fetal Intestine Small	intestine
18	chr3:17193400-17197600	ZNF genes & repeats	Lung	lung
19	chr3:17193400-17210000	Strong transcription	Fetal Intestine Large	intestine
20	chr3:17193600-17197400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
21	chr3:17194000-17200400	Strong transcription	Fetal Muscle Trunk	muscle
22	chr3:17194000-17211400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:17194200-17196000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr3:17194200-17196000	ZNF genes & repeats	Brain Germinal Matrix	brain
25	chr3:17194200-17196400	ZNF genes & repeats	Ovary	ovary
26	chr3:17194400-17195800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr3:17194400-17196000	ZNF genes & repeats	GM12878-XiMat	blood
28	chr3:17194400-17196200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr3:17194400-17196200	ZNF genes & repeats	Liver	Liver
30	chr3:17194400-17196400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
31	chr3:17194400-17196800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:17194400-17197000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:17194600-17196000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
34	chr3:17194600-17197200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:17194600-17198800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr3:17194600-17199000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:17194600-17199400	Weak transcription	NHLF	lung
38	chr3:17194600-17200000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr3:17194600-17207400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr3:17194800-17195800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
41	chr3:17194800-17195800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr3:17194800-17195800	ZNF genes & repeats	Left Ventricle	heart
43	chr3:17194800-17195800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
44	chr3:17194800-17196000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
45	chr3:17194800-17196000	ZNF genes & repeats	Colonic Mucosa	Colon
46	chr3:17194800-17196000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
47	chr3:17194800-17196200	ZNF genes & repeats	Primary B cells from cord blood	blood
48	chr3:17194800-17196200	Strong transcription	Primary T cells from cord blood	blood
49	chr3:17194800-17196400	ZNF genes & repeats	Gastric	stomach
50	chr3:17194800-17196600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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