Variant report

Variant	rs73819643
Chromosome Location	chr3:17196675-17196676
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17195512..17197058-chr3:17200290..17201914,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17043157	0.84[AFR][1000 genomes]
rs56279437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57736694	0.94[EUR][1000 genomes]
rs61255999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73819641	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73819645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73819648	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73819650	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73819652	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73819653	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008636	chr3:17173415-17208267	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17183000-17198800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:17191400-17217600	Weak transcription	Small Intestine	intestine
3	chr3:17192200-17211400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:17193000-17196800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:17193000-17197200	ZNF genes & repeats	Spleen	Spleen
6	chr3:17193000-17198600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr3:17193200-17202600	Weak transcription	HepG2	liver
8	chr3:17193400-17197600	ZNF genes & repeats	Lung	lung
9	chr3:17193400-17210000	Strong transcription	Fetal Intestine Large	intestine
10	chr3:17193600-17197400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
11	chr3:17194000-17200400	Strong transcription	Fetal Muscle Trunk	muscle
12	chr3:17194000-17211400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:17194400-17196800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:17194400-17197000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:17194600-17197200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:17194600-17198800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:17194600-17199000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:17194600-17199400	Weak transcription	NHLF	lung
19	chr3:17194600-17200000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr3:17194600-17207400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:17194800-17198600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:17194800-17198600	ZNF genes & repeats	Esophagus	oesophagus
23	chr3:17194800-17201200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr3:17194800-17207400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr3:17194800-17207800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr3:17194800-17210400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr3:17195000-17196800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:17195000-17197600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:17195000-17198600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:17195000-17198600	Strong transcription	Thymus	Thymus
31	chr3:17195000-17202200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr3:17195000-17224200	Weak transcription	Fetal Kidney	kidney
33	chr3:17195200-17196800	Strong transcription	Brain Angular Gyrus	brain
34	chr3:17195200-17197800	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr3:17195200-17198600	Strong transcription	Brain Substantia Nigra	brain
36	chr3:17195200-17199000	Weak transcription	NHDF-Ad	bronchial
37	chr3:17195200-17200000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr3:17195200-17205600	Weak transcription	NHEK	skin
39	chr3:17195200-17205800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:17195200-17207600	Weak transcription	K562	blood
41	chr3:17195200-17223000	Weak transcription	Fetal Brain Female	brain
42	chr3:17195400-17197000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr3:17195400-17197200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr3:17195400-17197600	Strong transcription	Fetal Lung	lung
45	chr3:17195400-17197800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr3:17195400-17199000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:17195400-17199000	Strong transcription	Brain Hippocampus Middle	brain
48	chr3:17195400-17199000	Weak transcription	HSMMtube	muscle
49	chr3:17195400-17199200	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr3:17195400-17199400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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