Variant report

Variant	rs73819648
Chromosome Location	chr3:17199906-17199907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17043157	0.85[AFR][1000 genomes]
rs56279437	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57736694	0.94[EUR][1000 genomes]
rs61255999	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73819641	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73819643	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73819645	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73819650	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73819652	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73819653	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008636	chr3:17173415-17208267	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17191400-17217600	Weak transcription	Small Intestine	intestine
2	chr3:17192200-17211400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:17193200-17202600	Weak transcription	HepG2	liver
4	chr3:17193400-17210000	Strong transcription	Fetal Intestine Large	intestine
5	chr3:17194000-17200400	Strong transcription	Fetal Muscle Trunk	muscle
6	chr3:17194000-17211400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:17194600-17200000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr3:17194600-17207400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:17194800-17201200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr3:17194800-17207400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:17194800-17207800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr3:17194800-17210400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:17195000-17202200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr3:17195000-17224200	Weak transcription	Fetal Kidney	kidney
15	chr3:17195200-17200000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:17195200-17205600	Weak transcription	NHEK	skin
17	chr3:17195200-17205800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:17195200-17207600	Weak transcription	K562	blood
19	chr3:17195200-17223000	Weak transcription	Fetal Brain Female	brain
20	chr3:17195400-17203200	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr3:17195400-17206200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:17195400-17209600	Strong transcription	Dnd41	blood
23	chr3:17195600-17201000	Weak transcription	Fetal Thymus	thymus
24	chr3:17195600-17201800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:17195600-17208400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:17195600-17209600	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr3:17195600-17210000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr3:17195600-17210800	Strong transcription	Stomach Smooth Muscle	stomach
29	chr3:17195800-17219000	Strong transcription	Primary B cells from peripheral blood	blood
30	chr3:17196000-17201400	Weak transcription	GM12878-XiMat	blood
31	chr3:17196000-17207600	Strong transcription	Fetal Stomach	stomach
32	chr3:17196000-17209800	Strong transcription	Duodenum Mucosa	Duodenum
33	chr3:17196200-17200000	Weak transcription	Primary T cells from cord blood	blood
34	chr3:17196200-17200000	Strong transcription	Pancreas	Pancrea
35	chr3:17196200-17204000	Strong transcription	Fetal Intestine Small	intestine
36	chr3:17196200-17206400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr3:17196200-17208600	Strong transcription	Primary B cells from cord blood	blood
38	chr3:17196200-17209600	Strong transcription	Liver	Liver
39	chr3:17196200-17210200	Strong transcription	Adipose Nuclei	Adipose
40	chr3:17196400-17200000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr3:17196400-17200200	Weak transcription	Brain Germinal Matrix	brain
42	chr3:17196400-17201600	Strong transcription	Ovary	ovary
43	chr3:17196600-17200600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr3:17196600-17203800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr3:17196600-17212200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr3:17196800-17200800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr3:17196800-17201000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr3:17196800-17201200	Weak transcription	A549	lung
49	chr3:17196800-17205800	Weak transcription	Brain Angular Gyrus	brain
50	chr3:17196800-17209800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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