Variant report

Variant	rs17043157
Chromosome Location	chr3:17203751-17203752
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17203436..17206201-chr3:17208117..17210640,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs41285047	0.85[EUR][1000 genomes]
rs41285049	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55954744	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56279437	0.84[AFR][1000 genomes]
rs57736694	0.82[AFR][1000 genomes]
rs61255999	0.84[AFR][1000 genomes]
rs73819643	0.84[AFR][1000 genomes]
rs73819645	0.84[AFR][1000 genomes]
rs73819648	0.85[AFR][1000 genomes]
rs73819651	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008636	chr3:17173415-17208267	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17191400-17217600	Weak transcription	Small Intestine	intestine
2	chr3:17192200-17211400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:17193400-17210000	Strong transcription	Fetal Intestine Large	intestine
4	chr3:17194000-17211400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:17194600-17207400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:17194800-17207400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr3:17194800-17207800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr3:17194800-17210400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:17195000-17224200	Weak transcription	Fetal Kidney	kidney
10	chr3:17195200-17205600	Weak transcription	NHEK	skin
11	chr3:17195200-17205800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:17195200-17207600	Weak transcription	K562	blood
13	chr3:17195200-17223000	Weak transcription	Fetal Brain Female	brain
14	chr3:17195400-17206200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:17195400-17209600	Strong transcription	Dnd41	blood
16	chr3:17195600-17208400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr3:17195600-17209600	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:17195600-17210000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr3:17195600-17210800	Strong transcription	Stomach Smooth Muscle	stomach
20	chr3:17195800-17219000	Strong transcription	Primary B cells from peripheral blood	blood
21	chr3:17196000-17207600	Strong transcription	Fetal Stomach	stomach
22	chr3:17196000-17209800	Strong transcription	Duodenum Mucosa	Duodenum
23	chr3:17196200-17204000	Strong transcription	Fetal Intestine Small	intestine
24	chr3:17196200-17206400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:17196200-17208600	Strong transcription	Primary B cells from cord blood	blood
26	chr3:17196200-17209600	Strong transcription	Liver	Liver
27	chr3:17196200-17210200	Strong transcription	Adipose Nuclei	Adipose
28	chr3:17196600-17203800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:17196600-17212200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr3:17196800-17205800	Weak transcription	Brain Angular Gyrus	brain
31	chr3:17196800-17209800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:17197000-17210800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:17197200-17210200	Strong transcription	Spleen	Spleen
34	chr3:17197200-17211200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr3:17197400-17209600	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr3:17197600-17209600	Strong transcription	Lung	lung
37	chr3:17198000-17205600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr3:17198400-17225200	Weak transcription	HMEC	breast
39	chr3:17198600-17208400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr3:17198600-17210600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr3:17198600-17212600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr3:17199800-17204400	Strong transcription	Brain Hippocampus Middle	brain
43	chr3:17199800-17208400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr3:17200000-17204000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr3:17200000-17208200	Strong transcription	Primary T cells from cord blood	blood
46	chr3:17200000-17209200	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr3:17200200-17204000	Strong transcription	Esophagus	oesophagus
48	chr3:17200200-17204000	Strong transcription	Gastric	stomach
49	chr3:17200200-17205000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr3:17200200-17205400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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