Variant report

Variant	rs61255999
Chromosome Location	chr3:17198077-17198078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17191881..17194308-chr3:17196780..17198405,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17043157	0.84[AFR][1000 genomes]
rs56279437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57736694	1.00[EUR][1000 genomes]
rs73819641	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73819643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73819645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73819648	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73819650	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73819652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73819653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008636	chr3:17173415-17208267	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17183000-17198800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:17191400-17217600	Weak transcription	Small Intestine	intestine
3	chr3:17192200-17211400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:17193000-17198600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr3:17193200-17202600	Weak transcription	HepG2	liver
6	chr3:17193400-17210000	Strong transcription	Fetal Intestine Large	intestine
7	chr3:17194000-17200400	Strong transcription	Fetal Muscle Trunk	muscle
8	chr3:17194000-17211400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:17194600-17198800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:17194600-17199000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:17194600-17199400	Weak transcription	NHLF	lung
12	chr3:17194600-17200000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:17194600-17207400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr3:17194800-17198600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:17194800-17198600	ZNF genes & repeats	Esophagus	oesophagus
16	chr3:17194800-17201200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr3:17194800-17207400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr3:17194800-17207800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr3:17194800-17210400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr3:17195000-17198600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:17195000-17198600	Strong transcription	Thymus	Thymus
22	chr3:17195000-17202200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr3:17195000-17224200	Weak transcription	Fetal Kidney	kidney
24	chr3:17195200-17198600	Strong transcription	Brain Substantia Nigra	brain
25	chr3:17195200-17199000	Weak transcription	NHDF-Ad	bronchial
26	chr3:17195200-17200000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr3:17195200-17205600	Weak transcription	NHEK	skin
28	chr3:17195200-17205800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:17195200-17207600	Weak transcription	K562	blood
30	chr3:17195200-17223000	Weak transcription	Fetal Brain Female	brain
31	chr3:17195400-17199000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:17195400-17199000	Strong transcription	Brain Hippocampus Middle	brain
33	chr3:17195400-17199000	Weak transcription	HSMMtube	muscle
34	chr3:17195400-17199200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr3:17195400-17199400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr3:17195400-17203200	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr3:17195400-17206200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr3:17195400-17209600	Strong transcription	Dnd41	blood
39	chr3:17195600-17199000	Weak transcription	Osteobl	bone
40	chr3:17195600-17199200	Strong transcription	Placenta	Placenta
41	chr3:17195600-17201000	Weak transcription	Fetal Thymus	thymus
42	chr3:17195600-17201800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:17195600-17208400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr3:17195600-17209600	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr3:17195600-17210000	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr3:17195600-17210800	Strong transcription	Stomach Smooth Muscle	stomach
47	chr3:17195800-17198400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr3:17195800-17199000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr3:17195800-17199000	Weak transcription	HSMM	muscle
50	chr3:17195800-17219000	Strong transcription	Primary B cells from peripheral blood	blood

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