Variant report

Variant	rs56263521
Chromosome Location	chr3:99289415-99289416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1355763	1.00[EUR][1000 genomes]
rs1513309	1.00[EUR][1000 genomes]
rs1513314	1.00[EUR][1000 genomes]
rs16841267	1.00[EUR][1000 genomes]
rs16841271	1.00[EUR][1000 genomes]
rs16841275	1.00[EUR][1000 genomes]
rs16841381	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2048625	1.00[EUR][1000 genomes]
rs4928135	1.00[EUR][1000 genomes]
rs4928197	1.00[EUR][1000 genomes]
rs4928199	1.00[EUR][1000 genomes]
rs73858805	1.00[AFR][1000 genomes]
rs7627465	0.93[AFR][1000 genomes]
rs7641113	0.93[AFR][1000 genomes]
rs7647877	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv822192	chr3:99289359-99289994	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99283000-99293800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99286800-99289600	Enhancers	HSMM	muscle
3	chr3:99287200-99289600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:99287800-99289600	Enhancers	HSMMtube	muscle
5	chr3:99289000-99289600	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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