Variant report

Variant	rs1355763
Chromosome Location	chr3:99249012-99249013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1513309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1513314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16841267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16841271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841328	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16841381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2048625	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2700669	0.90[ASN][1000 genomes]
rs4928135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4928197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4928198	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4928199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56263521	1.00[EUR][1000 genomes]
rs7647877	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99242600-99254000	Weak transcription	HUVEC	blood vessel
2	chr3:99243400-99251000	Weak transcription	Osteobl	bone
3	chr3:99246200-99254200	Weak transcription	NHLF	lung
4	chr3:99246600-99262000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:99246800-99249200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:99247000-99251000	Weak transcription	Aorta	Aorta
7	chr3:99248200-99249200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:99248200-99253200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:99248400-99249200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:99248400-99249200	Enhancers	NHDF-Ad	bronchial
11	chr3:99248600-99249200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:99248600-99249400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:99248800-99249200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:99248800-99249200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr3:99248800-99249200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr3:99248800-99249200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr3:99248800-99249600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr3:99248800-99253600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:99249000-99249200	Enhancers	Brain Substantia Nigra	brain
20	chr3:99249000-99251000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr3:99249000-99254200	Weak transcription	Hela-S3	cervix

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