Variant report

Variant	rs16841328
Chromosome Location	chr3:99256071-99256072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1355763	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1513309	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1513314	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16841267	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16841271	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16841275	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16841381	1.00[AMR][1000 genomes]
rs2048625	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2700669	0.90[ASN][1000 genomes]
rs4928135	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4928197	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4928198	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4928199	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99246600-99262000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:99251400-99256200	Weak transcription	Aorta	Aorta
3	chr3:99253400-99256400	Enhancers	HSMM	muscle
4	chr3:99253600-99256400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:99253600-99256400	Enhancers	NHEK	skin
6	chr3:99254000-99256800	Enhancers	NHDF-Ad	bronchial
7	chr3:99254400-99256600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:99254800-99256400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:99254800-99258800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:99255200-99261400	Weak transcription	HMEC	breast
11	chr3:99255600-99256400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:99255600-99256400	Enhancers	Placenta Amnion	Placenta Amnion
13	chr3:99255600-99256600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:99255600-99256600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:99255600-99256600	Enhancers	Adipose Nuclei	Adipose
16	chr3:99255600-99262000	Weak transcription	NHLF	lung
17	chr3:99255800-99256600	Enhancers	Fetal Kidney	kidney
18	chr3:99256000-99256400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:99256000-99256400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:99256000-99256400	Enhancers	Fetal Lung	lung
21	chr3:99256000-99256400	Enhancers	Placenta	Placenta
22	chr3:99256000-99256400	Flanking Active TSS	Osteobl	bone
23	chr3:99256000-99256600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr3:99256000-99260200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:99256000-99261200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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