Variant report

Variant	rs16841267
Chromosome Location	chr3:99219936-99219937
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1355763	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1513309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16841275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16841328	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16841381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2048625	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2700669	0.93[ASN][1000 genomes]
rs4928135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4928198	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4928199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56263521	1.00[EUR][1000 genomes]
rs7647877	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv3916	chr3:99186008-99232052	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99217200-99220200	Enhancers	Osteobl	bone
2	chr3:99217800-99220000	Enhancers	Adipose Nuclei	Adipose
3	chr3:99217800-99220400	Enhancers	Right Atrium	heart
4	chr3:99218200-99222200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:99218400-99220000	Enhancers	Left Ventricle	heart
6	chr3:99218600-99220200	Enhancers	Right Ventricle	heart
7	chr3:99218800-99220000	Enhancers	Ovary	ovary
8	chr3:99218800-99221600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:99218800-99224000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr3:99218800-99226200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:99219400-99220000	Enhancers	Aorta	Aorta
12	chr3:99219600-99221600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:99219600-99221600	Weak transcription	HUVEC	blood vessel
14	chr3:99219600-99221800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:99219600-99222400	Weak transcription	HSMMtube	muscle
16	chr3:99219800-99220000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:99219800-99220200	Enhancers	NHEK	skin
18	chr3:99219800-99220800	Weak transcription	Esophagus	oesophagus
19	chr3:99219800-99221600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:99219800-99221600	Weak transcription	NHDF-Ad	bronchial
21	chr3:99219800-99221800	Weak transcription	HSMM	muscle
22	chr3:99219800-99221800	Weak transcription	NHLF	lung
23	chr3:99219800-99224600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr3:99219800-99224800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr3:99219800-99225000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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