Variant report

Variant	rs2700669
Chromosome Location	chr3:99198349-99198350
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11706612	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1355762	0.98[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1355763	0.89[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs1398745	0.90[EUR][1000 genomes]
rs1513309	0.93[ASN][1000 genomes]
rs1513314	0.93[ASN][1000 genomes]
rs16841267	0.93[ASN][1000 genomes]
rs16841271	0.90[ASN][1000 genomes]
rs16841275	0.90[ASN][1000 genomes]
rs16841322	0.90[EUR][1000 genomes]
rs16841324	0.90[EUR][1000 genomes]
rs16841328	0.90[ASN][1000 genomes]
rs16846668	0.90[EUR][1000 genomes]
rs2048625	1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs2342464	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4928135	0.93[ASN][1000 genomes]
rs4928197	0.95[ASN][1000 genomes]
rs4928198	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs4928199	0.90[ASN][1000 genomes]
rs57970654	0.90[EUR][1000 genomes]
rs59995477	0.90[EUR][1000 genomes]
rs61429079	0.95[EUR][1000 genomes]
rs61441734	0.90[EUR][1000 genomes]
rs6765040	0.88[EUR][1000 genomes]
rs6771475	0.93[EUR][1000 genomes]
rs6798177	0.90[EUR][1000 genomes]
rs6805837	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv3916	chr3:99186008-99232052	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99194800-99202600	Weak transcription	Muscle Satellite Cultured Cells	--

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