Variant report

Variant	rs6771475
Chromosome Location	chr3:99241938-99241939
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11706612	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1355762	0.93[EUR][1000 genomes]
rs1398745	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16841322	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16841324	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16846668	0.97[EUR][1000 genomes]
rs2342464	0.95[EUR][1000 genomes]
rs2700669	0.93[EUR][1000 genomes]
rs57970654	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59995477	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61429079	0.92[EUR][1000 genomes]
rs61441734	0.87[EUR][1000 genomes]
rs6765040	0.95[EUR][1000 genomes]
rs6798177	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6805837	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9850184	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99228400-99243000	Weak transcription	Aorta	Aorta
2	chr3:99238200-99242400	Weak transcription	NHDF-Ad	bronchial
3	chr3:99239600-99243000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:99241800-99242200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:99241800-99245800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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