Variant report

Variant	rs6798177
Chromosome Location	chr3:99207253-99207254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11706612	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1355762	0.90[EUR][1000 genomes]
rs1398745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16841322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16841324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16846668	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2342464	0.92[EUR][1000 genomes]
rs2700669	0.90[EUR][1000 genomes]
rs57970654	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59995477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61429079	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61441734	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6765040	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6771475	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6805837	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv3916	chr3:99186008-99232052	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1829957	chr3:99203330-99208129	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3463776	chr3:99206262-99212160	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	esv3463777	chr3:99206262-99212160	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv1831522	chr3:99207253-99219235	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99207200-99208400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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