Variant report

Variant	rs56265387
Chromosome Location	chr15:60441502-60441503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16942181	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57618177	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58652210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166328	1.00[AMR][1000 genomes]
rs7168096	1.00[AMR][1000 genomes]
rs7169024	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7169904	1.00[AMR][1000 genomes]
rs7183644	1.00[AMR][1000 genomes]
rs7183825	1.00[AMR][1000 genomes]
rs73433207	0.90[AMR][1000 genomes]
rs73433213	0.81[AMR][1000 genomes]
rs73433249	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433250	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433255	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433261	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433267	1.00[AMR][1000 genomes]
rs8023318	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8024537	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8025802	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8026117	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8026836	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8041476	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60430600-60447200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:60431200-60441800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:60440800-60443200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr15:60441000-60441600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr15:60441000-60442000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr15:60441000-60442200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:60441000-60443000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr15:60441200-60441800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:60441200-60442000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr15:60441200-60442800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr15:60441200-60443000	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links