Variant report
| Variant | rs73433213 |
|---|---|
| Chromosome Location | chr15:60436753-60436754 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:60432375..60434441-chr15:60436588..60439287,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs16942181 | 0.81[AMR][1000 genomes] |
| rs2219994 | 0.84[AMR][1000 genomes] |
| rs56179061 | 0.84[AMR][1000 genomes] |
| rs56265387 | 0.81[AMR][1000 genomes] |
| rs57618177 | 0.81[AMR][1000 genomes] |
| rs58652210 | 0.81[AMR][1000 genomes] |
| rs59349307 | 1.00[EUR][1000 genomes] |
| rs7166328 | 0.81[AMR][1000 genomes] |
| rs7168096 | 0.81[AMR][1000 genomes] |
| rs7169024 | 0.81[AMR][1000 genomes] |
| rs7169904 | 0.81[AMR][1000 genomes] |
| rs7170920 | 0.84[AMR][1000 genomes] |
| rs7183644 | 0.81[AMR][1000 genomes] |
| rs7183825 | 0.81[AMR][1000 genomes] |
| rs73433207 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs73433218 | 1.00[EUR][1000 genomes] |
| rs73433226 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs73433249 | 0.81[AMR][1000 genomes] |
| rs73433250 | 0.81[AMR][1000 genomes] |
| rs73433255 | 0.81[AMR][1000 genomes] |
| rs73433261 | 0.81[AMR][1000 genomes] |
| rs73433264 | 0.84[AMR][1000 genomes] |
| rs73433267 | 0.81[AMR][1000 genomes] |
| rs8023318 | 0.81[AMR][1000 genomes] |
| rs8024537 | 0.81[AMR][1000 genomes] |
| rs8025802 | 0.81[AMR][1000 genomes] |
| rs8026117 | 0.81[AMR][1000 genomes] |
| rs8026836 | 0.81[AMR][1000 genomes] |
| rs8032569 | 0.84[AMR][1000 genomes] |
| rs8041476 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv904280 | chr15:60042722-60524025 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:60430600-60447200 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 2 | chr15:60431200-60441800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
