Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11071505	0.80[EUR][1000 genomes]
rs11071507	0.80[EUR][1000 genomes]
rs16942151	0.91[EUR][1000 genomes]
rs16942152	0.91[EUR][1000 genomes]
rs16942154	0.91[EUR][1000 genomes]
rs16942155	0.91[EUR][1000 genomes]
rs16942157	0.91[EUR][1000 genomes]
rs16942159	0.91[EUR][1000 genomes]
rs16942161	1.00[EUR][1000 genomes]
rs16942183	0.91[EUR][1000 genomes]
rs16942203	0.91[EUR][1000 genomes]
rs2219994	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56179061	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57945434	1.00[EUR][1000 genomes]
rs58286054	0.80[EUR][1000 genomes]
rs61418073	0.83[EUR][1000 genomes]
rs73431228	0.91[EUR][1000 genomes]
rs73431232	0.91[EUR][1000 genomes]
rs73431248	0.91[EUR][1000 genomes]
rs73431251	0.91[EUR][1000 genomes]
rs73433213	0.84[AMR][1000 genomes]
rs73433226	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73433229	1.00[EUR][1000 genomes]
rs73433258	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73433262	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73433264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73433268	1.00[EUR][1000 genomes]
rs8032146	0.91[EUR][1000 genomes]
rs8032569	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs993192	1.00[EUR][1000 genomes]
rs994139	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60430600-60447200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:60440800-60443200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr15:60441000-60443000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr15:60441200-60442800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr15:60441200-60443000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr15:60441800-60442600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:60442000-60442600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:60442000-60445800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:60442000-60446600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:60442000-60447400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:60442200-60442600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: