Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16942151	0.91[EUR][1000 genomes]
rs16942152	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16942154	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16942155	1.00[EUR][1000 genomes]
rs16942157	1.00[EUR][1000 genomes]
rs16942159	1.00[EUR][1000 genomes]
rs16942161	0.91[EUR][1000 genomes]
rs16942183	0.83[EUR][1000 genomes]
rs16942203	0.83[EUR][1000 genomes]
rs2219994	0.87[EUR][1000 genomes]
rs56179061	0.91[EUR][1000 genomes]
rs57945434	0.91[EUR][1000 genomes]
rs61418073	0.91[EUR][1000 genomes]
rs7170920	0.91[EUR][1000 genomes]
rs73431232	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73431248	1.00[EUR][1000 genomes]
rs73431251	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73433226	0.91[EUR][1000 genomes]
rs73433229	0.91[EUR][1000 genomes]
rs73433258	0.87[EUR][1000 genomes]
rs73433262	0.91[EUR][1000 genomes]
rs73433264	0.91[EUR][1000 genomes]
rs73433268	0.91[EUR][1000 genomes]
rs8032146	1.00[EUR][1000 genomes]
rs8032569	0.91[EUR][1000 genomes]
rs993192	0.91[EUR][1000 genomes]
rs994139	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60412200-60415200	Enhancers	GM12878-XiMat	blood
2	chr15:60412600-60416800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr15:60412600-60419400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:60412600-60419400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:60413000-60415000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
6	chr15:60413000-60419400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:60413200-60416400	Weak transcription	Dnd41	blood
8	chr15:60413800-60415200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
9	chr15:60414400-60419400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:60414600-60415000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr15:60414600-60419400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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