Variant report
| Variant | rs73433226 |
|---|---|
| Chromosome Location | chr15:60439032-60439033 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:60432375..60434441-chr15:60436588..60439287,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11071505 | 0.80[EUR][1000 genomes] |
| rs11071507 | 0.80[EUR][1000 genomes] |
| rs16942151 | 0.91[EUR][1000 genomes] |
| rs16942152 | 0.91[EUR][1000 genomes] |
| rs16942154 | 0.91[EUR][1000 genomes] |
| rs16942155 | 0.91[EUR][1000 genomes] |
| rs16942157 | 0.91[EUR][1000 genomes] |
| rs16942159 | 0.91[EUR][1000 genomes] |
| rs16942161 | 1.00[EUR][1000 genomes] |
| rs16942183 | 0.91[EUR][1000 genomes] |
| rs16942203 | 0.91[EUR][1000 genomes] |
| rs2219994 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs56179061 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57945434 | 1.00[EUR][1000 genomes] |
| rs58286054 | 0.80[EUR][1000 genomes] |
| rs61418073 | 0.83[EUR][1000 genomes] |
| rs7170920 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73431228 | 0.91[EUR][1000 genomes] |
| rs73431232 | 0.91[EUR][1000 genomes] |
| rs73431248 | 0.91[EUR][1000 genomes] |
| rs73431251 | 0.91[EUR][1000 genomes] |
| rs73433207 | 0.83[AFR][1000 genomes] |
| rs73433213 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs73433229 | 1.00[EUR][1000 genomes] |
| rs73433258 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73433262 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73433264 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73433268 | 1.00[EUR][1000 genomes] |
| rs8032146 | 0.91[EUR][1000 genomes] |
| rs8032569 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs993192 | 1.00[EUR][1000 genomes] |
| rs994139 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv904280 | chr15:60042722-60524025 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:60430600-60447200 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 2 | chr15:60431200-60441800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
