Variant report

Variant	rs16942157
Chromosome Location	chr15:60418791-60418792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:60410507..60412710-chr15:60416339..60419288,2	K562	blood:

Variant related genes	Relation type
ENSG00000259223	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1108436	1.00[GIH][hapmap]
rs16942151	0.91[EUR][1000 genomes]
rs16942152	1.00[GIH][hapmap];0.90[TSI][hapmap];1.00[EUR][1000 genomes]
rs16942154	1.00[GIH][hapmap];0.90[TSI][hapmap];1.00[EUR][1000 genomes]
rs16942155	1.00[ASW][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16942159	0.90[ASW][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16942161	0.91[EUR][1000 genomes]
rs16942183	0.83[EUR][1000 genomes]
rs16942203	0.83[EUR][1000 genomes]
rs2219994	0.87[EUR][1000 genomes]
rs56179061	0.91[EUR][1000 genomes]
rs57945434	0.91[EUR][1000 genomes]
rs61418073	0.91[EUR][1000 genomes]
rs7170920	0.91[EUR][1000 genomes]
rs73431228	1.00[EUR][1000 genomes]
rs73431232	1.00[EUR][1000 genomes]
rs73431248	1.00[EUR][1000 genomes]
rs73431251	1.00[EUR][1000 genomes]
rs73433226	0.91[EUR][1000 genomes]
rs73433229	0.91[EUR][1000 genomes]
rs73433258	0.87[EUR][1000 genomes]
rs73433262	0.91[EUR][1000 genomes]
rs73433264	0.91[EUR][1000 genomes]
rs73433268	0.91[EUR][1000 genomes]
rs8032146	1.00[EUR][1000 genomes]
rs8032569	0.91[EUR][1000 genomes]
rs993192	0.91[EUR][1000 genomes]
rs994139	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60412600-60419400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr15:60412600-60419400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:60413000-60419400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:60414400-60419400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:60414600-60419400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:60415000-60419400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:60416600-60419400	Enhancers	GM12878-XiMat	blood
8	chr15:60417200-60419000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr15:60417200-60419200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr15:60417200-60419400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr15:60417200-60419400	Weak transcription	Brain Hippocampus Middle	brain
12	chr15:60417400-60419000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr15:60417400-60419200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:60417400-60419200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:60417800-60419400	Weak transcription	Esophagus	oesophagus
16	chr15:60418000-60419400	Weak transcription	Fetal Stomach	stomach
17	chr15:60418400-60419400	Enhancers	Primary T cells from cord blood	blood
18	chr15:60418400-60419400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:60418400-60419400	Enhancers	Dnd41	blood
20	chr15:60418600-60419400	Enhancers	Primary hematopoietic stem cells	blood
21	chr15:60418600-60419400	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr15:60418600-60419600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr15:60418600-60419600	Enhancers	Fetal Thymus	thymus

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