Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1108436	1.00[GIH][hapmap]
rs16942151	0.87[EUR][1000 genomes]
rs16942152	1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs16942154	1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs16942155	1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs16942157	1.00[GIH][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs16942159	1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs16942161	0.96[EUR][1000 genomes]
rs16942183	0.87[EUR][1000 genomes]
rs16942203	0.87[EUR][1000 genomes]
rs56179061	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57945434	0.96[EUR][1000 genomes]
rs7170920	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73431228	0.87[EUR][1000 genomes]
rs73431232	0.87[EUR][1000 genomes]
rs73431248	0.87[EUR][1000 genomes]
rs73431251	0.87[EUR][1000 genomes]
rs73433213	0.84[AMR][1000 genomes]
rs73433226	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73433229	0.96[EUR][1000 genomes]
rs73433258	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73433262	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73433264	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73433268	0.96[EUR][1000 genomes]
rs8032146	0.87[EUR][1000 genomes]
rs8032569	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs993192	0.96[EUR][1000 genomes]
rs994139	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60430600-60447200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:60442000-60445800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr15:60442000-60446600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:60442000-60447400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:60442800-60446400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:60442800-60446800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:60442800-60447400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:60443000-60446400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr15:60443000-60446800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:60443000-60447200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:60443200-60445800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:60444000-60445600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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