Variant report

Variant	rs16942203
Chromosome Location	chr15:60463231-60463232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11071505	0.88[EUR][1000 genomes]
rs11071507	0.88[EUR][1000 genomes]
rs16942151	0.91[EUR][1000 genomes]
rs16942152	0.83[EUR][1000 genomes]
rs16942154	0.83[EUR][1000 genomes]
rs16942155	0.83[EUR][1000 genomes]
rs16942157	0.83[EUR][1000 genomes]
rs16942159	0.83[EUR][1000 genomes]
rs16942161	0.91[EUR][1000 genomes]
rs16942183	1.00[EUR][1000 genomes]
rs2219994	0.87[EUR][1000 genomes]
rs56179061	0.91[EUR][1000 genomes]
rs57945434	0.91[EUR][1000 genomes]
rs58286054	0.88[EUR][1000 genomes]
rs7170920	0.91[EUR][1000 genomes]
rs73431228	0.83[EUR][1000 genomes]
rs73431232	0.83[EUR][1000 genomes]
rs73431248	0.83[EUR][1000 genomes]
rs73431251	0.83[EUR][1000 genomes]
rs73433226	0.91[EUR][1000 genomes]
rs73433229	0.91[EUR][1000 genomes]
rs73433258	0.87[EUR][1000 genomes]
rs73433262	0.91[EUR][1000 genomes]
rs73433264	0.91[EUR][1000 genomes]
rs73433268	0.91[EUR][1000 genomes]
rs8032146	0.83[EUR][1000 genomes]
rs8032569	0.91[EUR][1000 genomes]
rs993192	0.91[EUR][1000 genomes]
rs994139	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60454400-60464800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:60459200-60463600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:60463200-60465200	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links