Variant report

Variant	rs58286054
Chromosome Location	chr15:60465393-60465394
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11071505	0.92[EUR][1000 genomes]
rs11071507	0.92[EUR][1000 genomes]
rs16942151	0.80[EUR][1000 genomes]
rs16942161	0.80[EUR][1000 genomes]
rs16942183	0.88[EUR][1000 genomes]
rs16942203	0.88[EUR][1000 genomes]
rs56179061	0.80[EUR][1000 genomes]
rs57945434	0.80[EUR][1000 genomes]
rs7170920	0.80[EUR][1000 genomes]
rs73433226	0.80[EUR][1000 genomes]
rs73433229	0.80[EUR][1000 genomes]
rs73433262	0.80[EUR][1000 genomes]
rs73433264	0.80[EUR][1000 genomes]
rs73433268	0.80[EUR][1000 genomes]
rs8032569	0.80[EUR][1000 genomes]
rs993192	0.80[EUR][1000 genomes]
rs994139	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1036168	chr15:60465000-60530343	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60464200-60467000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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