Variant report

Variant	rs16942161
Chromosome Location	chr15:60420929-60420930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11071505	0.80[EUR][1000 genomes]
rs11071507	0.80[EUR][1000 genomes]
rs16942151	0.91[EUR][1000 genomes]
rs16942152	0.91[EUR][1000 genomes]
rs16942154	0.91[EUR][1000 genomes]
rs16942155	0.91[EUR][1000 genomes]
rs16942157	0.91[EUR][1000 genomes]
rs16942159	0.91[EUR][1000 genomes]
rs16942183	0.91[EUR][1000 genomes]
rs16942203	0.91[EUR][1000 genomes]
rs2219994	0.96[EUR][1000 genomes]
rs56179061	1.00[EUR][1000 genomes]
rs57945434	1.00[EUR][1000 genomes]
rs58286054	0.80[EUR][1000 genomes]
rs61418073	0.83[EUR][1000 genomes]
rs7170920	1.00[EUR][1000 genomes]
rs73431228	0.91[EUR][1000 genomes]
rs73431232	0.91[EUR][1000 genomes]
rs73431248	0.91[EUR][1000 genomes]
rs73431251	0.91[EUR][1000 genomes]
rs73433226	1.00[EUR][1000 genomes]
rs73433229	1.00[EUR][1000 genomes]
rs73433258	0.96[EUR][1000 genomes]
rs73433262	1.00[EUR][1000 genomes]
rs73433264	1.00[EUR][1000 genomes]
rs73433268	1.00[EUR][1000 genomes]
rs8032146	0.91[EUR][1000 genomes]
rs8032569	1.00[EUR][1000 genomes]
rs993192	1.00[EUR][1000 genomes]
rs994139	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60419400-60421800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr15:60419400-60422600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:60419600-60421000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr15:60419600-60421600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr15:60419600-60421800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr15:60420200-60421200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:60420200-60421800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr15:60420400-60421000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr15:60420400-60421000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr15:60420400-60421000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr15:60420400-60421000	Weak transcription	Pancreas	Pancrea
12	chr15:60420400-60421200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:60420400-60421200	Enhancers	Placenta	Placenta
14	chr15:60420400-60421400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:60420400-60421600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr15:60420400-60421800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:60420400-60421800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:60420400-60421800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr15:60420400-60422400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr15:60420600-60421000	Weak transcription	Brain Angular Gyrus	brain
21	chr15:60420600-60421000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr15:60420600-60421000	Enhancers	Rectal Smooth Muscle	rectum
23	chr15:60420600-60421000	Enhancers	Hela-S3	cervix
24	chr15:60420600-60421000	Enhancers	NHEK	skin
25	chr15:60420600-60421200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr15:60420600-60421200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:60420600-60421200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:60420600-60421200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr15:60420600-60421200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:60420600-60421200	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr15:60420600-60421200	Enhancers	Duodenum Mucosa	Duodenum
32	chr15:60420600-60421200	Enhancers	Fetal Thymus	thymus
33	chr15:60420600-60421200	Enhancers	NH-A	brain
34	chr15:60420600-60421400	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr15:60420600-60421400	Enhancers	Dnd41	blood
36	chr15:60420600-60421600	Enhancers	Primary T cells from cord blood	blood
37	chr15:60420600-60421600	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr15:60420600-60421600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr15:60420600-60421600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:60420600-60421600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr15:60420600-60421800	Enhancers	H9 Cell Line	embryonic stem cell
42	chr15:60420600-60421800	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr15:60420600-60421800	Enhancers	Brain Hippocampus Middle	brain
44	chr15:60420600-60421800	Enhancers	Brain Substantia Nigra	brain
45	chr15:60420600-60422400	Weak transcription	GM12878-XiMat	blood
46	chr15:60420600-60422400	Weak transcription	HMEC	breast
47	chr15:60420800-60421000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:60420800-60421000	Enhancers	Fetal Lung	lung
49	chr15:60420800-60421200	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr15:60420800-60421200	Enhancers	NHDF-Ad	bronchial

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