Variant report

Variant	rs61418073
Chromosome Location	chr15:60384470-60384471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:60383264..60385120-chr15:60392540..60395389,2	MCF-7	breast:
2	chr15:60378723..60380718-chr15:60384442..60387083,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16942151	0.82[EUR][1000 genomes]
rs16942152	0.91[EUR][1000 genomes]
rs16942154	0.91[EUR][1000 genomes]
rs16942155	0.91[EUR][1000 genomes]
rs16942157	0.91[EUR][1000 genomes]
rs16942159	0.91[EUR][1000 genomes]
rs16942161	0.83[EUR][1000 genomes]
rs56179061	0.83[EUR][1000 genomes]
rs57945434	0.83[EUR][1000 genomes]
rs7170920	0.83[EUR][1000 genomes]
rs73431228	0.91[EUR][1000 genomes]
rs73431232	0.91[EUR][1000 genomes]
rs73431248	0.91[EUR][1000 genomes]
rs73431251	0.91[EUR][1000 genomes]
rs73433226	0.83[EUR][1000 genomes]
rs73433229	0.83[EUR][1000 genomes]
rs73433262	0.83[EUR][1000 genomes]
rs73433264	0.83[EUR][1000 genomes]
rs73433268	0.83[EUR][1000 genomes]
rs8032146	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs8032569	0.83[EUR][1000 genomes]
rs993192	0.83[EUR][1000 genomes]
rs994139	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833028	chr15:60227565-60418112	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60371200-60385600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:60371600-60393400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:60382400-60384600	Enhancers	NHEK	skin
4	chr15:60382400-60384800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:60382400-60386600	Enhancers	Liver	Liver
6	chr15:60382600-60386400	Enhancers	Adipose Nuclei	Adipose
7	chr15:60382600-60386600	Enhancers	Fetal Intestine Small	intestine
8	chr15:60382800-60384600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:60382800-60384600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:60383200-60384800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:60383200-60385600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:60383200-60386000	Weak transcription	Esophagus	oesophagus
13	chr15:60383200-60386000	Weak transcription	Placenta	Placenta
14	chr15:60383200-60386200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:60383400-60384600	Enhancers	Hela-S3	cervix
16	chr15:60383600-60387400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr15:60383600-60387800	Weak transcription	NHDF-Ad	bronchial
18	chr15:60383800-60385400	Weak transcription	HepG2	liver
19	chr15:60384000-60387400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:60384000-60387600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr15:60384000-60387600	Weak transcription	NH-A	brain
22	chr15:60384200-60386000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:60384400-60387600	Weak transcription	Osteobl	bone

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