Variant report

Variant	rs73433249
Chromosome Location	chr15:60442641-60442642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16942181	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56265387	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57618177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58652210	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166328	1.00[AMR][1000 genomes]
rs7168096	1.00[AMR][1000 genomes]
rs7169024	1.00[AMR][1000 genomes]
rs7169904	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7183644	1.00[AMR][1000 genomes]
rs7183825	1.00[AMR][1000 genomes]
rs73433207	0.90[AMR][1000 genomes]
rs73433213	0.81[AMR][1000 genomes]
rs73433250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433258	0.81[AFR][1000 genomes]
rs73433261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433262	0.81[AFR][1000 genomes]
rs73433267	1.00[AMR][1000 genomes]
rs8023318	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8024537	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8025802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8026117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8026836	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8041476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60430600-60447200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:60440800-60443200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr15:60441000-60443000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr15:60441200-60442800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr15:60441200-60443000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr15:60442000-60445800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:60442000-60446600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:60442000-60447400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:60442600-60442800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr15:60442600-60442800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr15:60442600-60442800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:60442600-60442800	Enhancers	Duodenum Mucosa	Duodenum
13	chr15:60442600-60443000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:60442600-60444000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links