Variant report

Variant	rs56268705
Chromosome Location	chr6:145176714-145176715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10499238	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17074328	0.86[AFR][1000 genomes]
rs2297848	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55884033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56039647	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58627651	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58797562	0.86[AFR][1000 genomes]
rs59324373	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60747321	0.82[ASN][1000 genomes]
rs6900570	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6903007	0.86[AFR][1000 genomes]
rs6936275	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6941029	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73596379	0.82[AFR][1000 genomes]
rs73596388	0.82[AFR][1000 genomes]
rs73596396	0.86[AFR][1000 genomes]
rs73596560	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73598008	0.90[AFR][1000 genomes]
rs73598012	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73604356	0.86[AFR][1000 genomes]
rs73606408	0.90[AFR][1000 genomes]
rs73779328	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7747041	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145137400-145176800	Weak transcription	Fetal Heart	heart
2	chr6:145158600-145176800	Weak transcription	Esophagus	oesophagus
3	chr6:145159400-145177400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:145161000-145179000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:145167200-145176800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:145167400-145188000	Weak transcription	NHDF-Ad	bronchial
7	chr6:145167800-145176800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:145168400-145177000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:145169200-145177200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:145169400-145189400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:145169600-145177200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:145169800-145177200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:145170400-145177200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:145172000-145176800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:145172200-145177200	Weak transcription	HUVEC	blood vessel
16	chr6:145172400-145177400	Weak transcription	Fetal Stomach	stomach
17	chr6:145172400-145178800	Weak transcription	Lung	lung
18	chr6:145172600-145177200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:145173200-145176800	Weak transcription	NHLF	lung
20	chr6:145173400-145177200	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:145173400-145177800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:145173400-145178600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr6:145173600-145178000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr6:145174000-145177000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:145175000-145176800	Weak transcription	Adipose Nuclei	Adipose
26	chr6:145175000-145177400	Weak transcription	Fetal Thymus	thymus
27	chr6:145175200-145176800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:145175200-145177000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:145175200-145177000	Weak transcription	Dnd41	blood
30	chr6:145175200-145177200	Weak transcription	Osteobl	bone
31	chr6:145175200-145177400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:145175200-145177800	Weak transcription	Primary T cells from cord blood	blood
33	chr6:145175200-145178000	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr6:145175200-145178400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr6:145175200-145178800	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:145175200-145178800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:145175400-145177200	Weak transcription	HSMMtube	muscle
38	chr6:145175400-145177600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr6:145175600-145177200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:145175800-145177400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:145175800-145177800	Weak transcription	Primary B cells from cord blood	blood
42	chr6:145175800-145178400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:145175800-145178600	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr6:145176000-145178600	Weak transcription	Left Ventricle	heart
45	chr6:145176200-145178800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:145176400-145177400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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