Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10499238	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11756890	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2297848	0.92[ASN][1000 genomes]
rs4321838	0.99[AFR][1000 genomes]
rs55884033	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56039647	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56268705	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58627651	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59324373	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60747321	0.84[ASN][1000 genomes]
rs6900570	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6920492	0.86[AFR][1000 genomes]
rs6925712	0.99[AFR][1000 genomes]
rs6941029	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73596560	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73598012	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73604367	0.86[AFR][1000 genomes]
rs73604379	0.85[AFR][1000 genomes]
rs73779328	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7759754	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7761155	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7761905	0.88[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv464070	chr6:145184504-145214952	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604823	chr6:145184504-145214952	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145167400-145188000	Weak transcription	NHDF-Ad	bronchial
2	chr6:145169400-145189400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:145177400-145192200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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