Variant report

Variant	rs6941029
Chromosome Location	chr6:145178335-145178336
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145169081..145170847-chr6:145177041..145178659,2	MCF-7	breast:
2	chr6:145177565..145179136-chr6:145179298..145181387,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10499238	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17074328	0.91[AFR][1000 genomes]
rs2297848	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55884033	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56039647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56268705	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58627651	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58797562	0.91[AFR][1000 genomes]
rs59324373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60747321	0.82[ASN][1000 genomes]
rs6900570	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6903007	0.91[AFR][1000 genomes]
rs6936275	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73596379	0.86[AFR][1000 genomes]
rs73596388	0.86[AFR][1000 genomes]
rs73596396	0.91[AFR][1000 genomes]
rs73596560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73598008	0.95[AFR][1000 genomes]
rs73598012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73604356	0.91[AFR][1000 genomes]
rs73606408	0.95[AFR][1000 genomes]
rs73779328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7747041	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv886740	chr6:145105354-145199259	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145161000-145179000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:145167400-145188000	Weak transcription	NHDF-Ad	bronchial
3	chr6:145169400-145189400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:145172400-145178800	Weak transcription	Lung	lung
5	chr6:145173400-145178600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:145175200-145178400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:145175200-145178800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:145175200-145178800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:145175800-145178400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:145175800-145178600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:145176000-145178600	Weak transcription	Left Ventricle	heart
12	chr6:145176200-145178800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:145177400-145192200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:145178000-145178800	Enhancers	Monocytes-CD14+_RO01746	blood

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