Variant report

Variant	rs56273724
Chromosome Location	chr6:134276498-134276499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:134275087..134281858-chr6:134303258..134309045,8	K562	blood:
2	chr6:133132887..133135811-chr6:134273188..134277510,5	K562	blood:
3	chr6:134273314..134277341-chr6:134371733..134374606,4	K562	blood:
4	chr6:134275524..134278363-chr6:134292927..134296382,4	K562	blood:
5	chr5:179050328..179052454-chr6:134276328..134278240,2	K562	blood:
6	chr6:134274656..134276857-chr6:134311331..134313340,2	K562	blood:
7	chr6:134276287..134278466-chr6:134288025..134290579,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000169045	Chromatin interaction
ENSG00000112306	Chromatin interaction
ENSG00000146411	Chromatin interaction
ENSG00000028839	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57229560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938805	0.88[AFR][1000 genomes]
rs73548788	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73550525	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73550526	0.91[AMR][1000 genomes]
rs73550527	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774171	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7743546	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134275000-134276600	Flanking Active TSS	Fetal Brain Male	brain
2	chr6:134275000-134276600	Enhancers	Spleen	Spleen
3	chr6:134275000-134276600	Flanking Active TSS	Dnd41	blood
4	chr6:134275000-134276800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:134275200-134276600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:134275200-134276600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:134275200-134276600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr6:134275200-134276600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr6:134275200-134276600	Flanking Active TSS	Brain Hippocampus Middle	brain
10	chr6:134275200-134276600	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr6:134275200-134276600	Flanking Active TSS	NHEK	skin
12	chr6:134275200-134276600	Flanking Active TSS	NHLF	lung
13	chr6:134275200-134276800	Flanking Active TSS	Brain Germinal Matrix	brain
14	chr6:134275200-134276800	Flanking Active TSS	Fetal Brain Female	brain
15	chr6:134275400-134276600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:134275400-134276600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:134275400-134276600	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:134275400-134276600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr6:134275400-134276600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:134275400-134276600	Enhancers	Small Intestine	intestine
21	chr6:134275400-134276600	Transcr. at gene 5' and 3'	K562	blood
22	chr6:134275400-134289200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:134275600-134276600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:134275600-134276600	Enhancers	H9 Cell Line	embryonic stem cell
25	chr6:134275600-134276600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:134275600-134276600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:134275600-134276600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:134275600-134276600	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr6:134275600-134276600	Enhancers	Fetal Lung	lung
30	chr6:134275600-134276600	Enhancers	Fetal Thymus	thymus
31	chr6:134275600-134276600	Enhancers	Right Ventricle	heart
32	chr6:134275600-134276600	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr6:134275600-134276600	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr6:134275600-134276600	Enhancers	HSMM	muscle
35	chr6:134275600-134276800	Enhancers	Primary B cells from peripheral blood	blood
36	chr6:134275600-134276800	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr6:134275600-134276800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr6:134275600-134277200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:134275600-134279400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr6:134275600-134280200	Weak transcription	Lung	lung
41	chr6:134275600-134281800	Weak transcription	Placenta	Placenta
42	chr6:134275600-134283000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:134275800-134276600	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:134275800-134276600	Enhancers	Primary B cells from cord blood	blood
45	chr6:134275800-134276600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:134275800-134276600	Enhancers	Fetal Kidney	kidney
47	chr6:134275800-134276600	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr6:134275800-134276600	Enhancers	Thymus	Thymus
49	chr6:134275800-134276600	Flanking Active TSS	GM12878-XiMat	blood
50	chr6:134275800-134276800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell

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