Variant report

Variant	rs6938805
Chromosome Location	chr6:134269392-134269393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134259055..134262632-chr6:134266342..134269518,3	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10485159	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17063199	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063210	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063219	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2268067	1.00[EUR][1000 genomes]
rs2268068	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268069	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268071	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756876	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777897	1.00[EUR][1000 genomes]
rs3777898	1.00[EUR][1000 genomes]
rs3777899	1.00[JPT][hapmap]
rs3822940	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs4896015	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896016	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896018	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56273724	0.88[AFR][1000 genomes]
rs57229560	0.88[AFR][1000 genomes]
rs6902440	1.00[JPT][hapmap]
rs73548788	0.88[AFR][1000 genomes]
rs73550525	0.85[AFR][1000 genomes]
rs73550527	0.85[AFR][1000 genomes]
rs73774171	0.84[AFR][1000 genomes]
rs7743546	0.86[AFR][1000 genomes]
rs9483631	1.00[JPT][hapmap]
rs9493768	1.00[JPT][hapmap]
rs9493782	1.00[EUR][1000 genomes]
rs956103	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv604701	chr6:134248060-134269657	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3473402	chr6:134267059-134271657	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3506986	chr6:134268284-134270782	Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3473405	chr6:134268445-134270284	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv511916	chr6:134268592-134269877	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv8603	chr6:134268751-134269959	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv1840176	chr6:134268822-134274297	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
9	esv3473400	chr6:134268847-134269829	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3506981	chr6:134268876-134269809	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv3506987	chr6:134268880-134269833	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	esv3506989	chr6:134268896-134269766	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3473404	chr6:134268903-134269793	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	esv3473401	chr6:134268903-134269795	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv3473399	chr6:134268916-134269752	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv3506982	chr6:134268919-134269775	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	esv3506983	chr6:134268933-134269772	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	esv3332683	chr6:134268939-134269745	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	esv3506984	chr6:134268962-134269726	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	esv3473403	chr6:134268962-134269730	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	esv3506988	chr6:134268973-134269731	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
22	esv3473406	chr6:134268977-134269729	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
23	esv3506990	chr6:134268977-134269729	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
24	esv15240	chr6:134268981-134269712	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
25	nsv820631	chr6:134268981-134269712	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
26	nsv604702	chr6:134269008-134269657	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
27	esv1838635	chr6:134269008-134273139	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
28	nsv604703	chr6:134269090-134269657	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134266600-134272400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:134266800-134272200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:134267000-134272200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:134267800-134271600	Enhancers	Liver	Liver
5	chr6:134268000-134270200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:134268000-134270400	Enhancers	Duodenum Mucosa	Duodenum
7	chr6:134268000-134270400	Enhancers	Pancreas	Pancrea
8	chr6:134268200-134269600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:134268200-134270000	Weak transcription	Gastric	stomach
10	chr6:134268200-134270600	Enhancers	Stomach Mucosa	stomach
11	chr6:134268400-134272200	Weak transcription	Aorta	Aorta
12	chr6:134268600-134272400	Weak transcription	Fetal Brain Female	brain
13	chr6:134269000-134272400	Weak transcription	K562	blood
14	chr6:134269200-134270000	Enhancers	Rectal Mucosa Donor 29	rectum

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