Variant report

Variant	rs3822940
Chromosome Location	chr6:134306705-134306706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134271742..134274027-chr6:134306314..134308566,2	MCF-7	breast:
2	chr6:134305563..134309080-chr6:134310830..134313541,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000028839	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10485159	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063199	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17063210	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17063219	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2268067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268068	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2268069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2268071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3756876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3777897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777899	1.00[JPT][hapmap]
rs4896015	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6902440	1.00[JPT][hapmap]
rs6938805	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs9483631	1.00[JPT][hapmap]
rs9493768	1.00[JPT][hapmap]
rs9493782	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs956103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134276600-134314000	Weak transcription	Thymus	Thymus
2	chr6:134280600-134312200	Weak transcription	Lung	lung
3	chr6:134285000-134316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:134288200-134311800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:134290800-134316400	Weak transcription	Esophagus	oesophagus
6	chr6:134295000-134313800	Weak transcription	Spleen	Spleen
7	chr6:134295200-134311800	Weak transcription	Brain Germinal Matrix	brain
8	chr6:134297000-134318000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:134299400-134307200	Weak transcription	Left Ventricle	heart
10	chr6:134299400-134311800	Weak transcription	Gastric	stomach
11	chr6:134299400-134312000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:134299400-134313200	Weak transcription	Psoas Muscle	Psoas
13	chr6:134299400-134313400	Weak transcription	Aorta	Aorta
14	chr6:134299400-134313800	Weak transcription	Right Ventricle	heart
15	chr6:134299600-134310200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:134299800-134307000	Weak transcription	Ovary	ovary
17	chr6:134299800-134312000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:134299800-134313600	Weak transcription	Fetal Heart	heart
19	chr6:134299800-134314000	Weak transcription	Fetal Brain Male	brain
20	chr6:134300400-134312200	Weak transcription	Small Intestine	intestine
21	chr6:134300400-134315400	Weak transcription	Fetal Intestine Small	intestine
22	chr6:134300600-134306800	Weak transcription	Stomach Mucosa	stomach
23	chr6:134300600-134312000	Weak transcription	NHLF	lung
24	chr6:134301000-134312400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:134302000-134308400	Strong transcription	Placenta	Placenta
26	chr6:134302400-134307600	Strong transcription	GM12878-XiMat	blood
27	chr6:134302400-134308200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:134302600-134307800	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr6:134302600-134308800	Strong transcription	Liver	Liver
30	chr6:134302600-134309200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:134302800-134307400	Strong transcription	Duodenum Mucosa	Duodenum
32	chr6:134302800-134308400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:134302800-134308400	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr6:134302800-134308400	Strong transcription	Fetal Lung	lung
35	chr6:134302800-134324000	Weak transcription	Fetal Muscle Leg	muscle
36	chr6:134303000-134308000	Strong transcription	HSMM	muscle
37	chr6:134303000-134308600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:134303000-134308600	Strong transcription	HUVEC	blood vessel
39	chr6:134303000-134309400	Strong transcription	Primary B cells from peripheral blood	blood
40	chr6:134303200-134308000	Strong transcription	Stomach Smooth Muscle	stomach
41	chr6:134303200-134312200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr6:134303600-134308000	Enhancers	Primary T cells from cord blood	blood
43	chr6:134303600-134308600	Strong transcription	Fetal Brain Female	brain
44	chr6:134303800-134308400	Strong transcription	Adipose Nuclei	Adipose
45	chr6:134304400-134307800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:134304400-134312000	Weak transcription	Colon Smooth Muscle	Colon
47	chr6:134304600-134308400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr6:134304800-134306800	Weak transcription	HSMMtube	muscle
49	chr6:134304800-134308400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:134304800-134311800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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