Variant report

Variant	rs10485159
Chromosome Location	chr6:134305269-134305270
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:134301184-134306312	K562	blood:	n/a	n/a

Variant related genes	Relation type
TBPL1	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17063199	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17063210	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17063219	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2268067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268068	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2268069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2268071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3756876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3777897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777899	1.00[JPT][hapmap]
rs3822940	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896015	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6902440	1.00[JPT][hapmap]
rs6938805	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs9483631	1.00[JPT][hapmap]
rs9493768	1.00[JPT][hapmap]
rs9493782	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs956103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134276600-134314000	Weak transcription	Thymus	Thymus
2	chr6:134280600-134312200	Weak transcription	Lung	lung
3	chr6:134283200-134305600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:134285000-134316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:134288200-134311800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:134288400-134306600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:134290800-134316400	Weak transcription	Esophagus	oesophagus
8	chr6:134295000-134313800	Weak transcription	Spleen	Spleen
9	chr6:134295200-134311800	Weak transcription	Brain Germinal Matrix	brain
10	chr6:134297000-134318000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:134299400-134307200	Weak transcription	Left Ventricle	heart
12	chr6:134299400-134311800	Weak transcription	Gastric	stomach
13	chr6:134299400-134312000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:134299400-134313200	Weak transcription	Psoas Muscle	Psoas
15	chr6:134299400-134313400	Weak transcription	Aorta	Aorta
16	chr6:134299400-134313800	Weak transcription	Right Ventricle	heart
17	chr6:134299600-134310200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:134299800-134305800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:134299800-134307000	Weak transcription	Ovary	ovary
20	chr6:134299800-134312000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:134299800-134313600	Weak transcription	Fetal Heart	heart
22	chr6:134299800-134314000	Weak transcription	Fetal Brain Male	brain
23	chr6:134300400-134312200	Weak transcription	Small Intestine	intestine
24	chr6:134300400-134315400	Weak transcription	Fetal Intestine Small	intestine
25	chr6:134300600-134305800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:134300600-134306800	Weak transcription	Stomach Mucosa	stomach
27	chr6:134300600-134312000	Weak transcription	NHLF	lung
28	chr6:134301000-134312400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:134302000-134308400	Strong transcription	Placenta	Placenta
30	chr6:134302400-134307600	Strong transcription	GM12878-XiMat	blood
31	chr6:134302400-134308200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:134302600-134307800	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr6:134302600-134308800	Strong transcription	Liver	Liver
34	chr6:134302600-134309200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:134302800-134305400	Strong transcription	Fetal Kidney	kidney
36	chr6:134302800-134307400	Strong transcription	Duodenum Mucosa	Duodenum
37	chr6:134302800-134308400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:134302800-134308400	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:134302800-134308400	Strong transcription	Fetal Lung	lung
40	chr6:134302800-134324000	Weak transcription	Fetal Muscle Leg	muscle
41	chr6:134303000-134305400	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:134303000-134306000	Strong transcription	Brain Anterior Caudate	brain
43	chr6:134303000-134306200	Strong transcription	Fetal Intestine Large	intestine
44	chr6:134303000-134306200	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr6:134303000-134306200	Strong transcription	NHDF-Ad	bronchial
46	chr6:134303000-134306600	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr6:134303000-134308000	Strong transcription	HSMM	muscle
48	chr6:134303000-134308600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:134303000-134308600	Strong transcription	HUVEC	blood vessel
50	chr6:134303000-134309400	Strong transcription	Primary B cells from peripheral blood	blood

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