Variant report

Variant	rs17063210
Chromosome Location	chr6:134281289-134281290
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134275087..134281858-chr6:134303258..134309045,8	K562	blood:
2	chr6:133144384..133146734-chr6:134279858..134281420,2	K562	blood:
3	chr6:134280961..134282692-chr6:134285960..134288759,2	MCF-7	breast:
4	chr6:134279544..134281858-chr6:134302522..134305024,3	K562	blood:
5	chr6:134274112..134275882-chr6:134279566..134281493,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000028839	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10485159	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17063199	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063219	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2268067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2268068	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3777898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3777899	1.00[JPT][hapmap]
rs3822940	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896015	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6902440	1.00[JPT][hapmap]
rs6938805	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483631	1.00[JPT][hapmap]
rs9493768	1.00[JPT][hapmap]
rs9493782	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs956103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134275400-134289200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:134275600-134281800	Weak transcription	Placenta	Placenta
3	chr6:134275600-134283000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:134276200-134283000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:134276200-134299000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:134276200-134303000	Weak transcription	HSMMtube	muscle
7	chr6:134276400-134283000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:134276400-134284600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:134276400-134285200	Weak transcription	Osteobl	bone
10	chr6:134276400-134285800	Weak transcription	Stomach Mucosa	stomach
11	chr6:134276400-134286200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:134276400-134290800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:134276400-134291000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:134276600-134281800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:134276600-134282400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:134276600-134283000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:134276600-134283000	Weak transcription	Right Ventricle	heart
18	chr6:134276600-134283200	Weak transcription	Spleen	Spleen
19	chr6:134276600-134284600	Weak transcription	NH-A	brain
20	chr6:134276600-134288600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:134276600-134288800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:134276600-134288800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:134276600-134288800	Weak transcription	HSMM	muscle
24	chr6:134276600-134293000	Weak transcription	Fetal Lung	lung
25	chr6:134276600-134302800	Weak transcription	Fetal Kidney	kidney
26	chr6:134276600-134314000	Weak transcription	Thymus	Thymus
27	chr6:134276800-134281600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:134276800-134285800	Weak transcription	Fetal Brain Male	brain
29	chr6:134277200-134282000	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr6:134277200-134282800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:134277400-134288000	Weak transcription	NHLF	lung
32	chr6:134278000-134303600	Weak transcription	Dnd41	blood
33	chr6:134278600-134281400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr6:134278600-134281600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:134279200-134282600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:134279400-134282600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:134279400-134282800	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:134279400-134282800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:134279400-134283000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:134279400-134287000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:134279400-134298800	Weak transcription	Psoas Muscle	Psoas
42	chr6:134279600-134281400	Enhancers	GM12878-XiMat	blood
43	chr6:134279600-134282200	Weak transcription	Brain Anterior Caudate	brain
44	chr6:134279600-134282600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:134279600-134283000	Weak transcription	Brain Substantia Nigra	brain
46	chr6:134279600-134287600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:134279800-134282000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr6:134279800-134294200	Weak transcription	Primary T cells from cord blood	blood
49	chr6:134280000-134281400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr6:134280000-134281600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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