Variant report

Variant	rs17063219
Chromosome Location	chr6:134293885-134293886
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134293580..134296132-chr6:134309183..134311272,2	K562	blood:
2	chr6:134293697..134297795-chr6:134300055..134303954,5	K562	blood:
3	chr6:134275524..134278363-chr6:134292927..134296382,4	K562	blood:
4	chr6:134292321..134294541-chr6:134307112..134309722,2	K562	blood:
5	chr6:134286093..134287998-chr6:134291720..134294657,2	K562	blood:
6	chr6:134272705..134274666-chr6:134292169..134296187,3	MCF-7	breast:
7	chr6:134291938..134294223-chr6:134383822..134386476,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000028839	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10485159	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17063199	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17063210	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2268067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2268068	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2268069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2268071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3756876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3777897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3777898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3777899	1.00[JPT][hapmap]
rs3822940	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896015	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4896018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6902440	1.00[JPT][hapmap]
rs6938805	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9483631	1.00[JPT][hapmap]
rs9493768	1.00[JPT][hapmap]
rs9493782	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs956103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134276200-134299000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:134276200-134303000	Weak transcription	HSMMtube	muscle
3	chr6:134276600-134302800	Weak transcription	Fetal Kidney	kidney
4	chr6:134276600-134314000	Weak transcription	Thymus	Thymus
5	chr6:134278000-134303600	Weak transcription	Dnd41	blood
6	chr6:134279400-134298800	Weak transcription	Psoas Muscle	Psoas
7	chr6:134279800-134294200	Weak transcription	Primary T cells from cord blood	blood
8	chr6:134280400-134304200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:134280600-134312200	Weak transcription	Lung	lung
10	chr6:134281000-134294400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:134281400-134298800	Weak transcription	Ovary	ovary
12	chr6:134282000-134298800	Weak transcription	Gastric	stomach
13	chr6:134282600-134302000	Weak transcription	Placenta	Placenta
14	chr6:134283000-134294200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:134283200-134305600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:134285000-134316600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:134286800-134299000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr6:134286800-134304200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:134288200-134294400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:134288200-134298800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:134288200-134311800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:134288400-134294000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:134288400-134306600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:134288800-134294200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:134288800-134299000	Weak transcription	Brain Angular Gyrus	brain
26	chr6:134289200-134294400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:134289200-134298800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:134289400-134298800	Weak transcription	Hela-S3	cervix
29	chr6:134289400-134298800	Weak transcription	NHEK	skin
30	chr6:134289400-134299400	Weak transcription	HUVEC	blood vessel
31	chr6:134289600-134299000	Weak transcription	HMEC	breast
32	chr6:134289800-134304200	Weak transcription	Fetal Stomach	stomach
33	chr6:134290000-134298800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:134290000-134299200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:134290000-134304200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:134290200-134302400	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr6:134290800-134295000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:134290800-134298800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr6:134290800-134316400	Weak transcription	Esophagus	oesophagus
40	chr6:134291000-134294000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr6:134291000-134294200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr6:134291000-134294400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:134291000-134299000	Weak transcription	Aorta	Aorta
44	chr6:134291200-134294200	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:134291200-134294200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr6:134291200-134294200	Weak transcription	GM12878-XiMat	blood
47	chr6:134291200-134298800	Weak transcription	Brain Anterior Caudate	brain
48	chr6:134291200-134302400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:134291400-134294200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:134291400-134294200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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