Variant report

Variant	rs4896018
Chromosome Location	chr6:134276949-134276950
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:134275087..134281858-chr6:134303258..134309045,8	K562	blood:
2	chr6:134276652..134279783-chr6:134349366..134352805,3	K562	blood:
3	chr6:133132887..133135811-chr6:134273188..134277510,5	K562	blood:
4	chr6:134276542..134279292-chr6:134300954..134304099,3	K562	blood:
5	chr6:134273314..134277341-chr6:134371733..134374606,4	K562	blood:
6	chr6:134275524..134278363-chr6:134292927..134296382,4	K562	blood:
7	chr5:179050328..179052454-chr6:134276328..134278240,2	K562	blood:
8	chr6:134276287..134278466-chr6:134288025..134290579,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000169045	Chromatin interaction
ENSG00000146411	Chromatin interaction
ENSG00000028839	Chromatin interaction
ENSG00000112306	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10485159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17063199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17063210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17063219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2268067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2268068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2268069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2268071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3756876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3777897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3777898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3822940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4896016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6938805	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9493782	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs956103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134275400-134289200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:134275600-134277200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:134275600-134279400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr6:134275600-134280200	Weak transcription	Lung	lung
5	chr6:134275600-134281800	Weak transcription	Placenta	Placenta
6	chr6:134275600-134283000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:134276000-134277400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr6:134276000-134280400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr6:134276000-134280400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:134276200-134277000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:134276200-134278800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:134276200-134278800	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:134276200-134279000	Weak transcription	Adipose Nuclei	Adipose
14	chr6:134276200-134280600	Enhancers	Liver	Liver
15	chr6:134276200-134283000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:134276200-134299000	Weak transcription	Fetal Intestine Small	intestine
17	chr6:134276200-134303000	Weak transcription	HSMMtube	muscle
18	chr6:134276400-134277000	Enhancers	Brain Angular Gyrus	brain
19	chr6:134276400-134277000	Enhancers	Brain Anterior Caudate	brain
20	chr6:134276400-134277200	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr6:134276400-134277800	Enhancers	Brain Substantia Nigra	brain
22	chr6:134276400-134277800	Weak transcription	Hela-S3	cervix
23	chr6:134276400-134278400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:134276400-134278800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:134276400-134278800	Weak transcription	Psoas Muscle	Psoas
26	chr6:134276400-134280200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr6:134276400-134280800	Weak transcription	Gastric	stomach
28	chr6:134276400-134281000	Weak transcription	Aorta	Aorta
29	chr6:134276400-134283000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr6:134276400-134284600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:134276400-134285200	Weak transcription	Osteobl	bone
32	chr6:134276400-134285800	Weak transcription	Stomach Mucosa	stomach
33	chr6:134276400-134286200	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr6:134276400-134290800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:134276400-134291000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:134276600-134277200	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr6:134276600-134277200	Active TSS	GM12878-XiMat	blood
38	chr6:134276600-134277400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:134276600-134277400	Weak transcription	Small Intestine	intestine
40	chr6:134276600-134277600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:134276600-134277600	Active TSS	K562	blood
42	chr6:134276600-134278000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:134276600-134278000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:134276600-134278000	Enhancers	Dnd41	blood
45	chr6:134276600-134278200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:134276600-134278400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:134276600-134278600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:134276600-134278800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr6:134276600-134278800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:134276600-134278800	Weak transcription	Primary B cells from cord blood	blood

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