Variant report
| Variant | rs56301624 |
|---|---|
| Chromosome Location | chr3:42512781-42512782 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12631333 | 0.88[EUR][1000 genomes] |
| rs12633727 | 0.88[EUR][1000 genomes] |
| rs1354992 | 0.84[EUR][1000 genomes] |
| rs1354993 | 0.87[EUR][1000 genomes] |
| rs1508207 | 0.88[EUR][1000 genomes] |
| rs1508208 | 0.88[EUR][1000 genomes] |
| rs1508210 | 0.87[EUR][1000 genomes] |
| rs17306848 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs420851 | 0.86[EUR][1000 genomes] |
| rs442075 | 0.86[EUR][1000 genomes] |
| rs57117562 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs59200964 | 0.88[EUR][1000 genomes] |
| rs59779882 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs600792 | 0.84[EUR][1000 genomes] |
| rs601204 | 0.85[EUR][1000 genomes] |
| rs6768356 | 0.85[EUR][1000 genomes] |
| rs73067984 | 0.88[EUR][1000 genomes] |
| rs7619038 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9818643 | 0.85[EUR][1000 genomes] |
| rs9828788 | 0.85[EUR][1000 genomes] |
| rs9876105 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529987 | chr3:41921995-42591771 | Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
| 2 | nsv1005533 | chr3:41953873-42596375 | Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 3 | nsv967008 | chr3:42511086-42514663 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:42510200-42514200 | Weak transcription | Duodenum Mucosa | Duodenum |
