Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42483647..42486316-chr3:42489863..42491371,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12631333	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12633727	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1354992	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1354993	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1508207	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1508208	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1508210	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17306848	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs442075	1.00[CEU][hapmap]
rs56301624	0.85[EUR][1000 genomes]
rs57117562	0.86[EUR][1000 genomes]
rs59200964	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59779882	0.86[EUR][1000 genomes]
rs600792	1.00[CEU][hapmap]
rs601204	1.00[CEU][hapmap]
rs6768356	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73067984	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7619038	0.85[EUR][1000 genomes]
rs9818643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828788	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529987	chr3:41921995-42591771	Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1005533	chr3:41953873-42596375	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42487600-42491000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:42487600-42491200	Enhancers	H9 Cell Line	embryonic stem cell
3	chr3:42487600-42491200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:42488000-42491200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:42489000-42491000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:42490200-42491000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:42490200-42491200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:42490200-42493200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:42490400-42491000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:42490600-42491000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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