Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42513067..42515977-chr3:42516724..42519478,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12631333	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12633727	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1354992	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1354993	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1508207	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1508208	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1508210	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17306848	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs420851	0.87[EUR][1000 genomes]
rs442075	0.87[EUR][1000 genomes]
rs56301624	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59200964	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59779882	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs600792	0.84[EUR][1000 genomes]
rs601204	0.86[EUR][1000 genomes]
rs6768356	0.86[EUR][1000 genomes]
rs73067984	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7619038	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9818643	0.86[EUR][1000 genomes]
rs9828788	0.86[EUR][1000 genomes]
rs9876105	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529987	chr3:41921995-42591771	Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1005533	chr3:41953873-42596375	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv967008	chr3:42511086-42514663	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42510200-42514200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:42513200-42515800	Enhancers	Placenta	Placenta
3	chr3:42513400-42514400	Enhancers	HUVEC	blood vessel
4	chr3:42513400-42515600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:42513400-42516400	Enhancers	Lung	lung
6	chr3:42513400-42519600	Enhancers	Spleen	Spleen

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