Variant report

Variant	rs56318259
Chromosome Location	chr8:92620358-92620359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1457052	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28735086	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56160120	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57453564	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57610492	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58830410	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58888435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59075912	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309604	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73309653	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309657	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7832321	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9649975	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029962	chr8:92560661-92753342	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831391	chr8:92578256-92761091	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:92614200-92622800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:92618600-92620600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:92620000-92620400	Weak transcription	Fetal Brain Male	brain
4	chr8:92620000-92622200	Enhancers	Fetal Brain Female	brain
5	chr8:92620200-92620800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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