Variant report

Variant	rs58888435
Chromosome Location	chr8:92613111-92613112
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1457052	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28735086	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56160120	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56318259	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57453564	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57610492	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58830410	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59075912	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309604	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73309653	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309657	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7832321	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9649975	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029962	chr8:92560661-92753342	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831391	chr8:92578256-92761091	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:92609600-92614400	Enhancers	NHLF	lung
2	chr8:92610200-92614400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:92610400-92613600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:92610600-92613600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:92611400-92614200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:92611400-92614200	Enhancers	HSMMtube	muscle
7	chr8:92611600-92613200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:92611600-92613400	Flanking Active TSS	NHDF-Ad	bronchial
9	chr8:92611600-92614200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr8:92611600-92614200	Enhancers	HSMM	muscle
11	chr8:92611800-92614000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:92612200-92614200	Enhancers	Osteobl	bone
13	chr8:92612400-92614000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr8:92612600-92614200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:92612600-92616400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:92612800-92613800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:92612800-92613800	Weak transcription	Ovary	ovary
18	chr8:92612800-92614200	Enhancers	NH-A	brain
19	chr8:92612800-92616000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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