Variant report

Variant	rs56321981
Chromosome Location	chr12:10702415-10702416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10743908	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10772313	0.83[EUR][1000 genomes]
rs16915265	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16915318	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17206857	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17741632	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17741638	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17809278	0.82[AMR][1000 genomes]
rs2417907	0.81[EUR][1000 genomes]
rs4620802	0.81[EUR][1000 genomes]
rs55658101	0.83[EUR][1000 genomes]
rs55693758	0.83[EUR][1000 genomes]
rs55776135	0.83[EUR][1000 genomes]
rs55777152	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55922148	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55924876	0.83[EUR][1000 genomes]
rs55936935	0.83[EUR][1000 genomes]
rs55962548	0.83[EUR][1000 genomes]
rs56099735	0.83[EUR][1000 genomes]
rs56259905	0.82[EUR][1000 genomes]
rs56386466	0.83[EUR][1000 genomes]
rs6488298	0.80[EUR][1000 genomes]
rs67059753	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67181611	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67755400	0.82[EUR][1000 genomes]
rs67968014	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7134067	0.81[EUR][1000 genomes]
rs7135046	0.80[EUR][1000 genomes]
rs73054404	0.83[EUR][1000 genomes]
rs73054406	0.82[EUR][1000 genomes]
rs73054408	0.83[EUR][1000 genomes]
rs73054412	0.83[EUR][1000 genomes]
rs73054415	0.84[EUR][1000 genomes]
rs73054418	0.84[EUR][1000 genomes]
rs73054421	0.84[EUR][1000 genomes]
rs73054423	0.83[EUR][1000 genomes]
rs73054440	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73054441	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73054443	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73054450	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73054466	0.80[ASN][1000 genomes]
rs73054470	0.84[ASN][1000 genomes]
rs73054471	0.80[ASN][1000 genomes]
rs73062509	0.82[AMR][1000 genomes]
rs73062511	0.82[AMR][1000 genomes]
rs73062514	0.82[AMR][1000 genomes]
rs73070518	0.82[AMR][1000 genomes]
rs73070521	0.82[AMR][1000 genomes]
rs73070573	0.81[EUR][1000 genomes]
rs73070576	0.81[EUR][1000 genomes]
rs73070593	0.81[EUR][1000 genomes]
rs73070596	0.81[EUR][1000 genomes]
rs73070602	0.81[EUR][1000 genomes]
rs73072005	0.81[EUR][1000 genomes]
rs73072007	0.81[EUR][1000 genomes]
rs73072076	0.83[EUR][1000 genomes]
rs73072078	0.83[EUR][1000 genomes]
rs7954153	0.83[EUR][1000 genomes]
rs7955992	0.80[ASN][1000 genomes]
rs7956981	0.80[ASN][1000 genomes]
rs7966231	0.83[EUR][1000 genomes]
rs7977513	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898766	chr12:10537269-10722585	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv557459	chr12:10560591-10729821	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv898772	chr12:10622047-10722585	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv557479	chr12:10644663-10729821	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv898773	chr12:10660850-10722585	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv898774	chr12:10666025-10722585	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv898775	chr12:10668694-10735786	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1039120	chr12:10675930-10755446	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv832329	chr12:10677094-10845946	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10699600-10705200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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