Variant report

Variant	rs56328594
Chromosome Location	chr20:16281777-16281778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs59061144	1.00[AMR][1000 genomes]
rs59690233	1.00[AFR][1000 genomes]
rs60045808	1.00[AFR][1000 genomes]
rs7263142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898491	1.00[AFR][1000 genomes]
rs73898703	1.00[AFR][1000 genomes]
rs73898704	1.00[AFR][1000 genomes]
rs73898705	1.00[AFR][1000 genomes]
rs73898706	1.00[AFR][1000 genomes]
rs73898711	1.00[AFR][1000 genomes]
rs73898712	1.00[AFR][1000 genomes]
rs73898714	1.00[AFR][1000 genomes]
rs73898729	1.00[AFR][1000 genomes]
rs73898732	1.00[AFR][1000 genomes]
rs73898733	1.00[AFR][1000 genomes]
rs73901612	1.00[AFR][1000 genomes]
rs73901614	1.00[AFR][1000 genomes]
rs73901615	1.00[AFR][1000 genomes]
rs8122942	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833930	chr20:16134347-16302763	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16247600-16290800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr20:16248600-16291400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr20:16252000-16289400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr20:16252400-16283000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr20:16254000-16290800	Weak transcription	Esophagus	oesophagus
6	chr20:16254000-16298400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr20:16254200-16284200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr20:16255400-16283000	Weak transcription	Fetal Lung	lung
9	chr20:16262600-16285400	Weak transcription	Ovary	ovary
10	chr20:16262600-16346200	Weak transcription	Gastric	stomach
11	chr20:16264600-16284000	Weak transcription	Aorta	Aorta
12	chr20:16264800-16290800	Weak transcription	Lung	lung
13	chr20:16265000-16283800	Weak transcription	Primary B cells from cord blood	blood
14	chr20:16265000-16289000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr20:16265200-16282600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr20:16265600-16282000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr20:16265600-16282000	Weak transcription	Fetal Intestine Small	intestine
18	chr20:16265600-16282800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr20:16265600-16284200	Weak transcription	Left Ventricle	heart
20	chr20:16265800-16282200	Weak transcription	Psoas Muscle	Psoas
21	chr20:16265800-16289200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr20:16270800-16302400	Weak transcription	Brain Hippocampus Middle	brain
23	chr20:16276400-16348200	Weak transcription	Colon Smooth Muscle	Colon
24	chr20:16277800-16286200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr20:16279000-16282000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr20:16281600-16284600	ZNF genes & repeats	Liver	Liver

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