Variant report

Variant	rs73898471
Chromosome Location	chr20:16265571-16265572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16264271..16267069-chr20:16272916..16274482,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56328594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59061144	1.00[AMR][1000 genomes]
rs59690233	1.00[AFR][1000 genomes]
rs60045808	1.00[AFR][1000 genomes]
rs7263142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898491	1.00[AFR][1000 genomes]
rs73898703	1.00[AFR][1000 genomes]
rs73898704	1.00[AFR][1000 genomes]
rs73898705	1.00[AFR][1000 genomes]
rs73898706	1.00[AFR][1000 genomes]
rs73898711	1.00[AFR][1000 genomes]
rs73898712	1.00[AFR][1000 genomes]
rs73898714	1.00[AFR][1000 genomes]
rs73898729	1.00[AFR][1000 genomes]
rs73898732	1.00[AFR][1000 genomes]
rs73898733	1.00[AFR][1000 genomes]
rs73901612	1.00[AFR][1000 genomes]
rs73901614	1.00[AFR][1000 genomes]
rs73901615	1.00[AFR][1000 genomes]
rs8122942	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833930	chr20:16134347-16302763	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16242400-16275000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:16247600-16290800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr20:16248600-16291400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:16248800-16267000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr20:16248800-16272600	Weak transcription	Primary T cells from cord blood	blood
6	chr20:16249000-16272800	Weak transcription	Right Ventricle	heart
7	chr20:16249200-16277400	Weak transcription	Brain Substantia Nigra	brain
8	chr20:16250000-16266800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr20:16252000-16270800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr20:16252000-16289400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr20:16252400-16283000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr20:16253000-16277800	Weak transcription	Brain Angular Gyrus	brain
13	chr20:16253600-16268200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr20:16254000-16278800	Weak transcription	Adipose Nuclei	Adipose
15	chr20:16254000-16281400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr20:16254000-16290800	Weak transcription	Esophagus	oesophagus
17	chr20:16254000-16298400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr20:16254200-16278600	Weak transcription	Pancreas	Pancrea
19	chr20:16254200-16284200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr20:16255400-16283000	Weak transcription	Fetal Lung	lung
21	chr20:16261400-16272800	Weak transcription	Osteobl	bone
22	chr20:16261600-16270800	Weak transcription	HepG2	liver
23	chr20:16262000-16266600	Weak transcription	Thymus	Thymus
24	chr20:16262600-16285400	Weak transcription	Ovary	ovary
25	chr20:16262600-16346200	Weak transcription	Gastric	stomach
26	chr20:16263000-16265600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr20:16263600-16273200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr20:16263600-16277200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr20:16263800-16265600	Enhancers	Fetal Muscle Leg	muscle
30	chr20:16263800-16265800	Enhancers	Psoas Muscle	Psoas
31	chr20:16264200-16265600	Enhancers	Primary B cells from peripheral blood	blood
32	chr20:16264400-16265600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr20:16264400-16265600	Enhancers	Fetal Intestine Large	intestine
34	chr20:16264400-16281600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr20:16264600-16265600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr20:16264600-16265600	Flanking Active TSS	Duodenum Mucosa	Duodenum
37	chr20:16264600-16265600	Enhancers	Left Ventricle	heart
38	chr20:16264600-16284000	Weak transcription	Aorta	Aorta
39	chr20:16264800-16290800	Weak transcription	Lung	lung
40	chr20:16265000-16265600	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr20:16265000-16283800	Weak transcription	Primary B cells from cord blood	blood
42	chr20:16265000-16289000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr20:16265200-16265600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr20:16265200-16265600	Enhancers	Fetal Muscle Trunk	muscle
45	chr20:16265200-16265600	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr20:16265200-16273200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr20:16265200-16281200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr20:16265200-16282600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr20:16265400-16265600	Enhancers	Fetal Intestine Small	intestine
50	chr20:16265400-16265800	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links