Variant report

Variant	rs563376887
Chromosome Location	chr7:38836212-38836213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38836202..38837177-chr7:39504337..39505154,4	K562	blood:

Variant related genes	Relation type
ENSG00000106536	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032637	chr7:38832627-38902723	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv887966	chr7:38835035-38933942	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38793400-38861200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:38800200-38837600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:38803200-38845400	Weak transcription	Colonic Mucosa	Colon
4	chr7:38803200-38846000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr7:38813800-38836400	Weak transcription	HUVEC	blood vessel
6	chr7:38813800-38839600	Weak transcription	Right Ventricle	heart
7	chr7:38813800-38857400	Weak transcription	HSMM	muscle
8	chr7:38820000-38836600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr7:38822200-38837400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:38822400-38836400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:38822400-38855200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:38824800-38836400	Strong transcription	Primary B cells from cord blood	blood
13	chr7:38825000-38837800	Weak transcription	Fetal Heart	heart
14	chr7:38825200-38836400	Strong transcription	Primary B cells from peripheral blood	blood
15	chr7:38826200-38836400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr7:38827200-38836400	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr7:38827400-38836400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr7:38828600-38836400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr7:38829200-38837200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr7:38829400-38836400	Weak transcription	Brain Hippocampus Middle	brain
21	chr7:38829400-38837200	Weak transcription	Small Intestine	intestine
22	chr7:38829400-38837400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:38829400-38837600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr7:38829400-38837600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr7:38829400-38838200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:38829400-38839000	Weak transcription	Gastric	stomach
27	chr7:38829400-38841600	Weak transcription	Osteobl	bone
28	chr7:38829400-38846600	Weak transcription	Brain Anterior Caudate	brain
29	chr7:38829400-38846600	Weak transcription	Brain Substantia Nigra	brain
30	chr7:38829400-38846800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr7:38829400-38854600	Weak transcription	Left Ventricle	heart
32	chr7:38829400-38855200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr7:38829400-38855600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr7:38829400-38856400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:38829400-38864400	Weak transcription	Thymus	Thymus
36	chr7:38829400-38864600	Weak transcription	NHLF	lung
37	chr7:38829600-38837400	Weak transcription	HepG2	liver
38	chr7:38829600-38838200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr7:38829800-38838200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr7:38830600-38836400	Strong transcription	Primary T cells from cord blood	blood
41	chr7:38831000-38838000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr7:38831000-38838200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr7:38831000-38871200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr7:38831400-38836800	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr7:38831400-38838800	Weak transcription	Fetal Muscle Trunk	muscle
46	chr7:38831600-38836400	Strong transcription	Primary hematopoietic stem cells	blood
47	chr7:38831600-38839000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr7:38831800-38838000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr7:38831800-38841600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr7:38831800-38846400	Weak transcription	Brain Inferior Temporal Lobe	brain

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