Variant report

Variant	rs56343519
Chromosome Location	chr15:46003719-46003720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10152241	0.95[EUR][1000 genomes]
rs10152294	0.95[EUR][1000 genomes]
rs10152295	0.95[EUR][1000 genomes]
rs10152920	0.95[EUR][1000 genomes]
rs10152945	0.95[EUR][1000 genomes]
rs10152989	0.95[EUR][1000 genomes]
rs10152998	0.95[EUR][1000 genomes]
rs10153006	0.95[EUR][1000 genomes]
rs28453292	0.95[EUR][1000 genomes]
rs28582392	0.95[EUR][1000 genomes]
rs55776736	0.95[EUR][1000 genomes]
rs55821596	0.95[EUR][1000 genomes]
rs61296707	0.95[EUR][1000 genomes]
rs72717126	0.84[ASN][1000 genomes]
rs72717129	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72717181	0.95[EUR][1000 genomes]
rs72717183	0.95[EUR][1000 genomes]
rs72717187	0.95[EUR][1000 genomes]
rs72717188	0.95[EUR][1000 genomes]
rs72717189	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv523136	chr15:45990780-46158407	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45998000-46005000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:45998000-46007000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:45998200-46007000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr15:45998600-46006800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:45998800-46003800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:45998800-46004600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:46002600-46003800	Enhancers	Rectal Smooth Muscle	rectum
8	chr15:46003000-46006800	Weak transcription	Psoas Muscle	Psoas
9	chr15:46003000-46007000	Weak transcription	Gastric	stomach
10	chr15:46003200-46006800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:46003200-46011600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:46003200-46011800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:46003400-46006800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr15:46003600-46006600	Weak transcription	Colon Smooth Muscle	Colon
15	chr15:46003600-46006600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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