Variant report

Variant	rs55776736
Chromosome Location	chr15:46007513-46007514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:46007371..46008347-chr15:46082281..46083609,5	MCF-7	breast:
2	chr15:46007429..46008286-chr15:46082488..46083181,2	MCF-7	breast:
3	chr15:46006164..46008790-chr15:46082417..46084060,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10152241	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10152294	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10152295	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10152920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10152945	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10152989	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10152998	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10153006	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17629860	0.81[ASN][1000 genomes]
rs17629997	0.81[ASN][1000 genomes]
rs28453292	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28582392	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55821596	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56146453	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56343519	0.95[EUR][1000 genomes]
rs61296707	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72717124	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717126	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72717129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72717181	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72717183	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72717187	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72717188	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72717189	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72717191	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72717192	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv523136	chr15:45990780-46158407	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:46003200-46011600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:46003200-46011800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:46006600-46007600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:46006600-46007600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:46006600-46007600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr15:46006600-46007800	Enhancers	NHLF	lung
7	chr15:46006600-46008400	Enhancers	Rectal Smooth Muscle	rectum
8	chr15:46006800-46007600	Enhancers	HUVEC	blood vessel
9	chr15:46006800-46007600	Enhancers	K562	blood
10	chr15:46007000-46008200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:46007200-46007600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
12	chr15:46007200-46007600	Enhancers	Fetal Brain Male	brain
13	chr15:46007200-46007600	Enhancers	NHDF-Ad	bronchial
14	chr15:46007200-46007600	Enhancers	Osteobl	bone
15	chr15:46007200-46011400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:46007200-46016400	Weak transcription	Gastric	stomach
17	chr15:46007400-46007600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:46007400-46008200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:46007400-46008200	Weak transcription	Colon Smooth Muscle	Colon
20	chr15:46007400-46011600	Weak transcription	Fetal Lung	lung

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