Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10152241	0.91[ASN][1000 genomes]
rs10152294	0.91[ASN][1000 genomes]
rs10152295	0.91[ASN][1000 genomes]
rs10152920	0.91[ASN][1000 genomes]
rs10152945	0.91[ASN][1000 genomes]
rs10152989	0.91[ASN][1000 genomes]
rs10152998	0.91[ASN][1000 genomes]
rs10153006	0.91[ASN][1000 genomes]
rs17629860	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28453292	0.91[ASN][1000 genomes]
rs28582392	0.91[ASN][1000 genomes]
rs55776736	0.81[ASN][1000 genomes]
rs55821596	0.91[ASN][1000 genomes]
rs56146453	0.81[ASN][1000 genomes]
rs61296707	0.91[ASN][1000 genomes]
rs72717124	0.81[ASN][1000 genomes]
rs72717126	0.86[ASN][1000 genomes]
rs72717129	0.86[ASN][1000 genomes]
rs72717181	0.91[ASN][1000 genomes]
rs72717183	0.91[ASN][1000 genomes]
rs72717187	0.91[ASN][1000 genomes]
rs72717188	0.91[ASN][1000 genomes]
rs72717189	0.91[ASN][1000 genomes]
rs72717191	1.00[ASN][1000 genomes]
rs72717192	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv523136	chr15:45990780-46158407	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1041692	chr15:46017726-46048854	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:46026600-46035200	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:46029600-46035400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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