Variant report

Variant	rs56146453
Chromosome Location	chr15:46008381-46008382
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:46006164..46008790-chr15:46082417..46084060,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10152241	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10152294	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10152295	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10152920	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10152945	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10152989	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10152998	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10153006	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17629860	0.81[ASN][1000 genomes]
rs17629997	0.81[ASN][1000 genomes]
rs28453292	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28582392	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55776736	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55821596	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61296707	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72717124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717126	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72717129	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72717181	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72717183	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72717187	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72717188	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72717189	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72717191	0.81[ASN][1000 genomes]
rs72717192	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv523136	chr15:45990780-46158407	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:46003200-46011600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:46003200-46011800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:46006600-46008400	Enhancers	Rectal Smooth Muscle	rectum
4	chr15:46007200-46011400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:46007200-46016400	Weak transcription	Gastric	stomach
6	chr15:46007400-46011600	Weak transcription	Fetal Lung	lung
7	chr15:46007600-46008400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:46007600-46011600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr15:46008200-46008400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:46008200-46008400	Enhancers	Colon Smooth Muscle	Colon

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